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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgaagatcttaattctaggtccatttactattattatcacattaaattaagatgatttcatttctcttcaattagATTCTCCAATCACGCATAGGACATGGAATTGGTGCATATGGTCCTGGTATCAATTCCTCTCACACATTTCCCAATGGAAGTTTCCATGGAACATTAGCTG

Basic information

species Glycine max
transcript GLYMA14G10180.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15285748|gb|BI469639.1|BI469639
EST:     CCGTGAACCCAGAACTGAACTTTGATGTGGACAGGATCCTATCCAAGGAT                         ATTCTCCAATCACGCATAGGACATGGAATTGGTGCATATGGGCCTGGTATC
genomic: CCGTGAACCCAGAACTGAACTTTGATGTGGACAGGATCCTATCCAAGGATgtaagtgaag ... cttcaattagATTCTCCAATCACGCATAGGACATGGAATTGGTGCATATGGTCCTGGTATC
EST: gi|58022718|gb|CX709459.1|CX709459
EST:     ATGTGGACAGGATCCTATCCAAGGAT                         ATTCTCCATTCACGCATAGGACATGGAATTGGTGCATATGGTCCTGGTATC
genomic: ATGTGGACAGGATCCTATCCAAGGATgtaagtgaag ... cttcaattagATTCTCCAATCACGCATAGGACATGGAATTGGTGCATATGGTCCTGGTATC
EST: gi|58014517|gb|CX701259.1|CX701259
EST:     CCGTGAACCCAGAACTGAACTTTGATGTGGACAGGATCCTATCCAAGGAT                         ATTCTCCAATCACGCAT--GACATGGAATTGGTGCATATGGTCCTGGTATC
genomic: CCGTGAACCCAGAACTGAACTTTGATGTGGACAGGATCCTATCCAAGGATgtaagtgaag ... cttcaattagATTCTCCAATCACGCATAGGACATGGAATTGGTGCATATGGTCCTGGTATC
EST: gi|151399817|gb|EV269688.1|EV269688
EST:     CCGTGAACCCAGAACTGAACTTTGATGTGGGCAGGATCCTATCCA-GGAT                         ATTCTCCAATCACGCATAGGACATGGAATTGGTGCATATGGTCCTGGTATC
genomic: CCGTGAACCCAGAACTGAACTTTGATGTGGACAGGATCCTATCCAAGGATgtaagtgaag ... cttcaattagATTCTCCAATCACGCATAGGACATGGAATTGGTGCATATGGTCCTGGTATC
EST: gi|151401288|gb|EV271102.1|EV271102
EST:     CCGTGAACCCAGAACTGAACTTTGATGTGGGCAGGATCCTATCCAAGGAT                         ATTCTCCAATCACGCATAG-ACATGGAATTGGTGCATATGGTCCTGGTATC
genomic: CCGTGAACCCAGAACTGAACTTTGATGTGGACAGGATCCTATCCAAGGATgtaagtgaag ... cttcaattagATTCTCCAATCACGCATAGGACATGGAATTGGTGCATATGGTCCTGGTATC
EST: gi|13252195|gb|BG363098.1|BG363098
EST:     CCGTGAACCCAGAACTGAACTTTGATGTGGACATGATCCTATCCAAGGAT                         ATTCTCCAATCACGCATAGGACATGGAATTGGTGCATATGGTCCTGGTATC
genomic: CCGTGAACCCAGAACTGAACTTTGATGTGGACAGGATCCTATCCAAGGATgtaagtgaag ... cttcaattagATTCTCCAATCACGCATAGGACATGGAATTGGTGCATATGGTCCTGGTATC
EST: gi|254342153|gb|GR853290.1|GR853290
EST:     CCGTGAACCCAGAACTGAACTTTGATGTGGACAGGATCCTATCCAAGGAT                         ATTCTCCAATCACGCATAGGACATGGAATTGGTGCATATGGTCCTGGTATC
genomic: CCGTGAACCCAGAACTGAACTTTGATGTGGACAGGATCCTATCCAAGGATgtaagtgaag ... cttcaattagATTCTCCAATCACGCATAGGACATGGAATTGGTGCATATGGTCCTGGTATC
EST: gi|58018231|gb|CX704973.1|CX704973
EST:     CCGTGAACCCAGAACTGAACTTTGATGTGGACAGGATCCTATCCAAGGAT                         ATTCTCCAATCACGCATAGGACATGGAATTGGTGCATATGGTCCTGGTATC
genomic: CCGTGAACCCAGAACTGAACTTTGATGTGGACAGGATCCTATCCAAGGATgtaagtgaag ... cttcaattagATTCTCCAATCACGCATAGGACATGGAATTGGTGCATATGGTCCTGGTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatttactattattatcacattaaattaagatgatttcatttctcttcaattagATTCTCCAATCACGCATAGGACATGGAATTGGTGCATATGGTCCTGGTATCAATTCCTCTCACACATTTCCCAATGGAAGTTTCCATGGAACATTAGCTG
                                   tttcatttctcttc  CT-rich tract
        tattattatcacatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtgaagatcttaattctaggtccatttactattattatcacattaaattaagatgatttcatttctcttcaattagATTCTCCAATCACGCATAGGACATGGAATTGGTGCATATGGTCCTGGTATCAATTCCTCTCACACATTTCCCAATGGAAGTTTCCATGGAACATTAGCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA