1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACAATATGGCATCTCTCCAAATTCCAACTTGTCTGTGCCAAGTTATTTTCAGCCCTACATTGTGACTTCTCACGGGCCTTTCCACAGCAAATATGGAGGGgtatgcttgtgtcattcttttttactattatgaacatcgtgcttgaatttgtgtcaaattttgatcccaaaatttgttaactactgtatgattttcagaa...
species | Glycine max |
transcript | GLYMA12G09060.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGCCCTACATTGTGACTTCTCACGGGCCTTTCCACAGCAAATATGGAGGG TTGAACTATGTCTTGAACACACTTTTTTCACTACACATGGTGATAGCGTNTEST: gi|213607613|gb|DB978494.1|DB978494
genomic: AGCCCTACATTGTGACTTCTCACGGGCCTTTCCACAGCAAATATGGAGGGgtatgcttgt ... ccttttgcagTTGAACTATGTCTTGAACACACTTTTTTCACTACACATGGTGATAGCGTTT
EST: AGCCCTACATTGTGACTTCTCACGGGCCTTTCCACAGCAAATATGGAGGG TTGAACTATGTCTTGAACACACTTTTTTCACTACACATGGTGATAGCGTTTEST: gi|51338209|gb|CO982075.1|CO982075
genomic: AGCCCTACATTGTGACTTCTCACGGGCCTTTCCACAGCAAATATGGAGGGgtatgcttgt ... ccttttgcagTTGAACTATGTCTTGAACACACTTTTTTCACTACACATGGTGATAGCGTTT
EST: AGCCTTACATTGTGACTTCTCACGGGCCTTTCCACAGCAAATATGGAGGG TTGAACTATGTCTTGAACACACTTTTTTCACTACACATGGTGATAGCGTTTEST: gi|209718410|gb|BW666235.1|BW666235
genomic: AGCCCTACATTGTGACTTCTCACGGGCCTTTCCACAGCAAATATGGAGGGgtatgcttgt ... ccttttgcagTTGAACTATGTCTTGAACACACTTTTTTCACTACACATGGTGATAGCGTTT
EST: AGCCCTACATTGTGACTTCTCACGGGCCTTTCCACAGCAAATATGGAGGG TTGAACTATGTCTTGAACACACTTTTTTCACTACACATGGTGATAGCGTTTEST: gi|209723327|gb|BW651309.1|BW651309
genomic: AGCCCTACATTGTGACTTCTCACGGGCCTTTCCACAGCAAATATGGAGGGgtatgcttgt ... ccttttgcagTTGAACTATGTCTTGAACACACTTTTTTCACTACACATGGTGATAGCGTTT
EST: AGCCCTACATTGTGACTTCTCACGGGCCTTTCCACAGCAAATATGGAGGG TTGAACTATGTCTTGAACACACTTTTTTCACTACACATGGTGATAGCGTTT
genomic: AGCCCTACATTGTGACTTCTCACGGGCCTTTCCACAGCAAATATGGAGGGgtatgcttgt ... ccttttgcagTTGAACTATGTCTTGAACACACTTTTTTCACTACACATGGTGATAGCGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAATATGGCATCTCTCCAAATTCCAACTTGTCTGTGCCAAGTTATTTTCAGCCCTACATTGTGACTTCTCACGGGCCTTTCCACAGCAAATATGGAGGGgtatgcttgtgtcattcttttttactattatgaacatcgtgcttgaatttgtgtcaaattttgatcccaaaatttgttaactactgtatgattttcagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG