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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCACGAGGAAGTGGTAGACGGTTTGCCGGCGGATGACGACGAGTTTGTGTCGCGGCACTCGCATATGAAGTATGAACTCAGAGATTCACCTGGTTTAGgtattgaatttttgcagtttcgattctgaataattgaatggttcattgatttgattcaatgatggttggaattgaaaatatgatttcgattttcacgtgtgttacttgactgtttag

Basic information

species Glycine max
transcript GLYMA12G09060.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09060.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0061g01310.t01 (Vitis vinifera), 5'ss of exon 1
AGGCACGAGGAAGTGGTAGACGGTTTGCCG------GCGGATGACGACGAGTTTGTGTCGCGGCACTCGCATATGAAGTATGAACTCAGAGATTCACCTGGTTTAGgtattgaatttttgcagtt----tcgatt-ctgaataattgaatggttcattga--tttgattcaatgatggttggaattgaaaatatgatttcgattttcacgtgtgttacttgactgtttag-
      || |||| ||| || |   ||||       |  || || || | ||||||| | |||||||||||||||||||||||||| || ||| ||||||||||||||      ||  || ||||    | ||||  |  ||  ||  |  ||     ||  | | ||| |    |  || |  |  | ||| |||  | | ||| |   |   |      | |||||   
------GATGAAGCGGTCGATGTACTGCCACAAACAGTTGACGATGATGGGTTTGTGGCTCGGCACTCGCATATGAAGTATGAACTTAGGGATACACCTGGTTTAGgtg--agtttcatgtagttatgcttgattatttgatgtttttagagtaagcagaactctaatttagcattaatttg--tctataatttgaaat-ggtttactgatacttagacaaaatgtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18040490|gb|BM308784.1|BM308784
EST:     GTCGCGGCACTCGCATATGAAGTATGAACTCAGAGATTCACCTGGTTTAG                         TTCCTATTGGCGTGTACGGAATTCAGCACTACTTTTCCATATT
genomic: GTCGCGGCACTCGCATATGAAGTATGAACTCAGAGATTCACCTGGTTTAGgtattgaatt ... gactgtttagTTCCTATTGGCGTGTACGGAATTCAGCACTACTTTTCCATATT