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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgttttcgtgtggcttagttgttgtttttcgtgatgtgttgtgtttgagtgttttaatcttggtggcgaagttgttgatgtgttagtgagtgtagGAGGAAACTTCTATGGTGGTATCGACCGTGCTCTTTGTCTCGGGGGTGACAACTCTCTTGCATATTGCTTTTGGCTCCAGGTTGCCCTTGATTCAGGGCC

Basic information

species Glycine max
transcript GLYMA12G09060.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09060.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 2
gtgagttgttttcgtgtggcttagttg-----ttgtttttcgtgatgtgttgtgtttgagtgttttaatcttggtggcgaagttg--ttgat--gtgttagtgagtgtagGAGGAAACTTCTATGGTGGTATCGACCGTGCTCTTTGTCTCGGGGGTGACAACTCTCTTGCATATTGCTTTTGGCTCCAGGTTGCCCTTGATTCAGGGCC
|| |||  || |  | |   |    ||     ||||  ||| | || ||||  | |||| || | |||  |||  |      |||   | ||    | ||||| ||||||||||| ||| | |||||||| || || ||||||||||| || || |||||||||||||||||||   | |||||| | |||||||||||||| ||||| |
gtaagtatttctaatatatttcttctgactgattgtacttcat-atttgtttagattgaatgctgtaag-ttgtagatttgcttgatctaattgaagatagtgggtgtagGAGGATACTGCGATGGTGGTCTCCACTGTGCTCTTTGTGTCAGGAGTGACAACTCTCTTGCATACATCATTTGGCACGAGGTTGCCCTTGATACAGGGTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtttgagtgttttaatcttggtggcgaagttgttgatgtgttagtgagtgtagGAGGAAACTTCTATGGTGGTATCGACCGTGCTCTTTGTCTCGGGGGTGACAACTCTCTTGCATATTGCTTTTGGCTCCAGGTTGCCCTTGATTCAGGGCC
           ttttaatctt  TA-rich tract