1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tctctgccgcagttgactgaaataaaaacatcacatttcagatcttactttctgttcagcgtagctgataatgagcgtcattttatgtgtttccttacagATTGATCAATCCTGTAGTTATATCCCCAACTATTGCTGCAGTTGGACTTTCATTCTACAGTTATGGTTTCCCATTAGTTGGTACATGTATTGAGATCGGT
species | Glycine max |
transcript | GLYMA12G09060.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
tactttctgttcagcgtagctgataatgagcgtcattttatgtgtttccttacagATTGATCAATCCTGTAGTTATATCCCCAACTATTGCTGCAGTTGGACTTTCATTCTACAGTTATGGTTTCCCATTAGTTGGTACATGTATTGAGATCGGT
tgtttcctt CT-rich tract
tcattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctctgccgcagttgactgaaataaaaacatcacatttcagatcttactttctgttcagcgtagctgataatgagcgtcattttatgtgtttccttacagATTGATCAATCCTGTAGTTATATCCCCAACTATTGCTGCAGTTGGACTTTCATTCTACAGTTATGGTTTCCCATTAGTTGGTACATGTATTGAGATCGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
-ctctgcc
- - - - gcagttg
- - - - - - - - - -aaataaa
- - - - - - - - - - - - - -acatcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtgt