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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTTAACTGAAAATGTTCACACAATTGCTGTGACTAAAATGGGAAGCCGCAGGGCAGTTCAACTGGGTGCATGCTTTCTGATAGTGTTGTCTCTTATAGgtaagtgtctgttatctttctgttcttggatctaaccttcattagaagtgtacttattatgaacaatgagttactgggatgaaaagccaatttgggttgt...

Basic information

species Glycine max
transcript GLYMA12G09060.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09060.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G095611_T03 (Zea mays), 5'ss of exon 8
ACTTTAACTGAAAATGTTCACACAATTGCTGTGACTAAAATGGGAAGCCGCAGGGCAGTTCAACTGGGTGCATGCTTTCTGATAGTGTTGTCTCTTATAGgtaagtg---tctgttatctttctgttcttg-gatctaaccttcattagaagtgtacttattatgaacaatgagttactgggatgaaaagccaatttgggttgt--
||  |||| || ||||| |||||||||||||||||||||||||| || ||  | ||||||  | | |||||    || || ||| || | ||| || | ||||||     | | ||   |||   ||   | ||   ||   ||||     | | |    | || ||   |   |   |   |     |       |   ||||  
ACAATAACAGAGAATGTACACACAATTGCTGTGACTAAAATGGGTAGTCGACGAGCAGTTGGATTCGGTGCTATTTTACTTATACTGCTTTCTATTGTTGgtaagaaaactattttgcattttcatttcagtgaaaaaattctcatgctgtgagaaaaggtaatcaaaggttcttgcttatcactgttattatgactcttttgtag

upper sequence: GLYMA12G09060.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G27810.1 (Arabidopsis thaliana), 5'ss of exon 8
ACTTTAACTGAAAATGTTCACACAATTGCTGTGACTAAAATGGGAAGCCGCAGGGCAGTTCAACTGGGTGCATGCTTTCTGATAGTGTTGTCTCTTATAGgtaagtgtctg---ttatctttctgttcttggatctaaccttcattagaagtgtacttattatgaacaatgagttactgggatgaaaagccaatttgggttgt
||| |||| ||||| ||||||||||| |||||||| ||||||||||||||||| |  ||| |  | || || ||  || || |  | || |||||| | |||||||   ||    |   | | | |  |    | | |  |||  ||      || || || |    ||||  | |||    |  | |    |  ||   | |
ACTCTAACCGAAAACGTTCACACAATCGCTGTGACCAAAATGGGAAGCCGCAGAGTTGTTGAGTTAGGCGCGTGTGTTTTGGTTATATTTTCTCTTGTTGgtaagtaagtggcactgcttatttatcttcaagtttcaagttctctattt-cataattttttttttgaatg--taactctatttcataatttacatgacctct

upper sequence: GLYMA12G09060.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G27810.3 (Arabidopsis thaliana), 5'ss of exon 8
ACTTTAACTGAAAATGTTCACACAATTGCTGTGACTAAAATGGGAAGCCGCAGGGCAGTTCAACTGGGTGCATGCTTTCTGATAGTGTTGTCTCTTATAGgtaagtgtctg---ttatctttctgttcttggatctaaccttcattagaagtgtacttattatgaacaatgagttactgggatgaaaagccaatttgggttgt----
    |||| ||||| ||||||||||| |||||||| ||||||||||||||||| |  ||| |  | || || ||  || || |  | || |||||| | |||||||   ||    |   | | | |  |    | | |  |||  ||      || || || |    ||||  | |||    |  | |    |  ||   | |    
----TAACCGAAAACGTTCACACAATCGCTGTGACCAAAATGGGAAGCCGCAGAGTTGTTGAGTTAGGCGCGTGTGTTTTGGTTATATTTTCTCTTGTTGGTAAgtaagtggcactgcttatttatcttcaagtttcaagttctctattt-cataattttttttttgaatg--taactctatttcataatttacatgacctctttag

upper sequence: GLYMA12G09060.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0061g01310.t01 (Vitis vinifera), 5'ss of exon 8
ACTTTAACTGAAAATGTTCACACAATTGCTGTGACTAAAATGGGAAGCCGCAGGGCAGTTCAACTGGGTGCATGCTTTCTGATAGTGTTGTCTCTTATAGgtaagtgtctgttatctttctgttcttggatctaaccttcattagaagtgtacttattatgaacaatgagttactgggatgaaaa-gccaatttgggttgt-
||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |  | ||||||||| || |||||| | | || ||| ||||||||||| | | |     || || |   ||   |  || || || |    |  |||||   | |   |  |  |||  |      |   ||   ||     
ACTCTAACTGAAAATGTGCACACTATTGCTGTGACTAAAATGGGAAGCCGCAGGGCAGTTGAGTTTGGTGCATGCGTTTTGATAGCGCTATCCCTTGTAGgtaagtgtttataaagcacctattttcatattcta--ttgatgagcatataaaatattaaatatagaaatattttggcttttttttgttcatgaagggcagg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6341754|gb|AW164640.1|AW164640
EST:     TGCTTTCTGATAGTGTTGTCTCTTATAG                         GTAAGGTTGGAGGATTCATTGCTTCAATTCCCGAAGTCATGGTTGCTGGTC
genomic: TGCTTTCTGATAGTGTTGTCTCTTATAGgtaagtgtct ... catacaacagGTAAGGTTGGAGGATTCATTGCTTCAATTCCCGAAGTCATGGTTGCTGGTC