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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgaatttttgcagtttcgattctgaataattgaatggttcattgatttgattcaatgatggttggaattgaaaatatgatttcgattttcacgtgtgttacttgactgtttagTTCCTATTGGCGTGTACGGAATTCAGCACTACTTTTCCATATTAGGTTCGTTGGTTCTGATTCCGCTTGTGATTGTTCCTACAATGGGAGGCACTCAT

Basic information

species Glycine max
transcript GLYMA12G09060.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18040490|gb|BM308784.1|BM308784
EST:     GTCGCGGCACTCGCATATGAAGTATGAACTCAGAGATTCACCTGGTTTAG                         TTCCTATTGGCGTGTACGGAATTCAGCACTACTTTTCCATATT
genomic: GTCGCGGCACTCGCATATGAAGTATGAACTCAGAGATTCACCTGGTTTAGgtattgaatt ... gactgtttagTTCCTATTGGCGTGTACGGAATTCAGCACTACTTTTCCATATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttggaattgaaaatatgatttcgattttcacgtgtgttacttgactgtttagTTCCTATTGGCGTGTACGGAATTCAGCACTACTTTTCCATATTAGGTTCGTTGGTTCTGATTCCGCTTGTGATTGTTCCTACAATGGGAGGCACTCAT
                                         acttgac  putative branch site (score: 4)
       aattgaaaatatgatt  TA-rich tract