1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgacacttgtaaatgcatattaattgtttttgtttaatgcatttttatgtttatctttcaattgtgcagtggtaatattttgattaaaatttgtttgtagATGGTAAGAAAAGTGTACATGTAGCTACTCCTCATCCTTCGAAAAAGGGTGGGAAAACTCCCAACAGTACAAAAGGCCAGACTCCCAATTCTGCTGGACA
species | Glycine max |
transcript | GLYMA12G09000.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AACTCCTATTTCTGCCAAGAAAGCTAAAACTGCTACTCCTGAAAAGACTG ATGGTAAGAAAAGTGTACATGTAGCTACTCCTCATCCTTCGAAAAAGGGTGEST: gi|14999862|gb|BI320676.1|BI320676
genomic: AACTCCTATTTCTGCCAAGAAAGCTAAAACTGCTACTCCTGAAAAGACTGgtgagtgtat ... ttgtttgtagATGGTAAGAAAAGTGTACATGTAGCTACTCCTCATCCTTCGAAAAAGGGTG
EST: AACTCCTATTTCTGCCAAGAAAGCTAAAACTGCTACTCCTGAAAAGACTG ATGGTAAGAAAAGTGTACATGTAGCTACTCCTCATCCTTCGAAAAAGGGTGEST: gi|254343635|gb|GR857391.1|GR857391
genomic: AACTCCTATTTCTGCCAAGAAAGCTAAAACTGCTACTCCTGAAAAGACTGgtgagtgtat ... ttgtttgtagATGGTAAGAAAAGTGTACATGTAGCTACTCCTCATCCTTCGAAAAAGGGTG
EST: AACTCCTATTTCTGCCAAGAAAGCTAAAACTGCTACTCCTGAAAAGACTG ATGGTAAGAAAAGTGTACATGTAGCTACTCCTCATCCTTCGAAAAAGGGTGEST: gi|192294172|gb|FG986261.1|FG986261
genomic: AACTCCTATTTCTGCCAAGAAAGCTAAAACTGCTACTCCTGAAAAGACTGgtgagtgtat ... ttgtttgtagATGGTAAGAAAAGTGTACATGTAGCTACTCCTCATCCTTCGAAAAAGGGTG
EST: AACTCCTATTTCTGCCAAGAAAGCTAAAACTGCTACTCCTGAAAAGACTG ATGGTAAGAAAAGTGTACATGTAGCTACTCCTCATCCTTCGAAAAAGGGTGEST: gi|254343634|gb|GR857390.1|GR857390
genomic: AACTCCTATTTCTGCCAAGAAAGCTAAAACTGCTACTCCTGAAAAGACTGgtgagtgtat ... ttgtttgtagATGGTAAGAAAAGTGTACATGTAGCTACTCCTCATCCTTCGAAAAAGGGTG
EST: AACTCCTATTTCTGCCAAGAAAGCTAAAACTGCTACTCCTGAAA-GACTG ATGGTAAGAAAAGTGTACATGTAGCTACTC-TCATCCTTCGAAAA-GGGTG
genomic: AACTCCTATTTCTGCCAAGAAAGCTAAAACTGCTACTCCTGAAAAGACTGgtgagtgtat ... ttgtttgtagATGGTAAGAAAAGTGTACATGTAGCTACTCCTCATCCTTCGAAAAAGGGTG
tatgtttatctttcaattgtgcagtggtaatattttgattaaaatttgtttgtagATGGTAAGAAAAGTGTACATGTAGCTACTCCTCATCCTTCGAAAAAGGGTGGGAAAACTCCCAACAGTACAAAAGGCCAGACTCCCAATTCTGCTGGACA
ttttgat putative branch site (score: 4)
tttgttt putative PPT
taatattttgattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgacacttgtaaatgcatattaattgtttttgtttaatgcatttttatgtttatctttcaattgtgcagtggtaatattttgattaaaatttgtttgtagATGGTAAGAAAAGTGTACATGTAGCTACTCCTCATCCTTCGAAAAAGGGTGGGAAAACTCCCAACAGTACAAAAGGCCAGACTCCCAATTCTGCTGGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
tgacact
- - - - - - -tgcatat
- - - - - - - - - - - - - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcagtg