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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCAATGACAATGCTTCTGACTTTTCTGgtgaggatcaatgtttcttttgaacttactatttttttagttgattgacttgatttggttactcaaaggatgttttattatctatgattttgacag

Basic information

species Glycine max
transcript GLYMA12G09000.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298184800|gb|HO030013.1|HO030013
EST:     TGGCAATGACAATGCTTCTGACTTTTCTG                         ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG
genomic: TGGCAATGACAATGCTTCTGACTTTTCTGgtgaggatca ... attttgacagATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG
EST: gi|298197480|gb|HO044959.1|HO044959
EST:     GTTCTAACTGGCAATGACAATGCTTCTGACTTTTCTG                         ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG
genomic: GTTCTAACTGGCAATGACAATGCTTCTGACTTTTCTGgtgaggatca ... attttgacagATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG
EST: gi|19268763|gb|BM885019.1|BM885019
EST:     TGGCAATGACAATGCTTCTGACTTTTCTG                         ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG
genomic: TGGCAATGACAATGCTTCTGACTTTTCTGgtgaggatca ... attttgacagATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG
EST: gi|15662220|gb|BI699591.1|BI699591
EST:     TGGCAATGACAATGCTTCTGACTTTTCTG                         ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG
genomic: TGGCAATGACAATGCTTCTGACTTTTCTGgtgaggatca ... attttgacagATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG
EST: gi|254343634|gb|GR857390.1|GR857390
EST:     TGGCAATGACAATGCTTCTGACTTTTCTG                         ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG
genomic: TGGCAATGACAATGCTTCTGACTTTTCTGgtgaggatca ... attttgacagATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG
EST: gi|298173787|gb|HO017123.1|HO017123
EST:     TGGCAATGACAATGCTTCTGACTTTTCTG                         ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG
genomic: TGGCAATGACAATGCTTCTGACTTTTCTGgtgaggatca ... attttgacagATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG