1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtagacgcttccgcatgatgtgaaagacattgttagatgtgcatgttacatgcagataactaataattatattttttcagGAAAACCTGAATTAAAAGCTGAAGGTGCGAAGGTTACCAAACCTTCTAAATCTATTCCCAAGATTGGTGCACCAGCAAAAGCTGCTGATCCTAAGAAAGA
species | Glycine max |
transcript | GLYMA12G09000.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG GAAAACCTGAATTAAAAGCTGAAGGTGCGAAGGTTACCAAACCTTCTAAATEST: gi|298197480|gb|HO044959.1|HO044959
genomic: ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATGgtagacgctt ... attttttcagGAAAACCTGAATTAAAAGCTGAAGGTGCGAAGGTTACCAAACCTTCTAAAT
EST: ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG GAAAACCTGAATTAAAAGCTGAAGGTGCGAAGGTTACCAAACCTTCTAAATEST: gi|254343635|gb|GR857391.1|GR857391
genomic: ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATGgtagacgctt ... attttttcagGAAAACCTGAATTAAAAGCTGAAGGTGCGAAGGTTACCAAACCTTCTAAAT
EST: GACGAGGAAC-TGCA-T-GAGGGAC-AGATAATG GAAAACCTGAATTAAAAGCTGAAGGTGCGAAGGTTACCAAACCTTTCTAAAEST: gi|192294172|gb|FG986261.1|FG986261
genomic: GACGAGGAACTTGCATTGGAGGGACAAGATAATGgtagacgctt ... attttttcagGAAAACCTGAATTAAAAGCTGAAGGTGCGAAGGTTACCAAACC-TTCTAAA
EST: TGATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG GAAAACCTGAATTAAAAGCTGAAGGTGCGAAGGTTACCAAACCTTCTAAATEST: gi|19268763|gb|BM885019.1|BM885019
genomic: TGATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATGgtagacgctt ... attttttcagGAAAACCTGAATTAAAAGCTGAAGGTGCGAAGGTTACCAAACCTTCTAAAT
EST: ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG GAAAACCTGAATTAAAAGCTGAAGGTGCGAAGGTTACCAAACCTTCTAAATEST: gi|15662220|gb|BI699591.1|BI699591
genomic: ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATGgtagacgctt ... attttttcagGAAAACCTGAATTAAAAGCTGAAGGTGCGAAGGTTACCAAACCTTCTAAAT
EST: ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG GAAAACCTGAATTAAAAGCTGAAGGTGCGAAGGTTACCAAACCTTCTAAATEST: gi|193589732|gb|FK544648.1|FK544648
genomic: ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATGgtagacgctt ... attttttcagGAAAACCTGAATTAAAAGCTGAAGGTGCGAAGGTTACCAAACCTTCTAAAT
EST: GAGGGACAAGATAATG GAAAACCTGAATTAAAAGCTGAAGGTGCGAAGGTTACCAAACCTTCTAAATEST: gi|254343634|gb|GR857390.1|GR857390
genomic: GAGGGACAAGATAATGgtagacgctt ... attttttcagGAAAACCTGAATTAAAAGCTGAAGGTGCGAAGGTTACCAAACCTTCTAAAT
EST: ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG GAAAACCTGAATTAAAAGCTGAAGGTGCGAAGGTTACCAAACCTTCTAAATEST: gi|298173787|gb|HO017123.1|HO017123
genomic: ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATGgtagacgctt ... attttttcagGAAAACCTGAATTAAAAGCTGAAGGTGCGAAGGTTACCAAACCTTCTAAAT
EST: ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG GAAAACCTGAATTAAAAGCTGAAGGTGCGAAGGTTACCAAACCTTCTAAAT
genomic: ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATGgtagacgctt ... attttttcagGAAAACCTGAATTAAAAGCTGAAGGTGCGAAGGTTACCAAACCTTCTAAAT
gacattgttagatgtgcatgttacatgcagataactaataattatattttttcagGAAAACCTGAATTAAAAGCTGAAGGTGCGAAGGTTACCAAACCTTCTAAATCTATTCCCAAGATTGGTGCACCAGCAAAAGCTGCTGATCCTAAGAAAGA
aactaat putative branch site (score: 2)
tattttttc putative PPT
atgcagataactaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagacgcttccgcatgatgtgaaagacattgttagatgtgcatgttacatgcagataactaataattatattttttcagGAAAACCTGAATTAAAAGCTGAAGGTGCGAAGGTTACCAAACCTTCTAAATCTATTCCCAAGATTGGTGCACCAGCAAAAGCTGCTGATCCTAAGAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA