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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCTCACCTATCATTGGATTTGGTTCTGGACTCCGATTCTGAGCTTTCCCACACTTCAAAAAGTGCCAGTGTCTTTTTCTGTGGATACAAAGTTCTAACgtatccttgatattacgttcttgaattgttagtatatatcggtttacttttttttagagatgtaatgttatgtgtatggtcgtaatgtcaaggttttttt...

Basic information

species Glycine max
transcript GLYMA12G09000.1
intron # 2
splice site 5'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298184800|gb|HO030013.1|HO030013
EST:     CACACTTCAAAAAGTGCCAGTGTCTTTTTCTGTGGATACAAAGTTCTAAC                         TGGCAATGACAATGCTTCTGACTTTTCTG
genomic: CACACTTCAAAAAGTGCCAGTGTCTTTTTCTGTGGATACAAAGTTCTAACgtatccttga ... gtggcactagTGGCAATGACAATGCTTCTGACTTTTCTG
EST: gi|19268763|gb|BM885019.1|BM885019
EST:     CACACTTCAAAAAGTGCCAGTGTCTTTTTCTGTGGATACAAAGTTCTAAC                         TGGCAATGACAATGCTTCTGACTTTTCTG
genomic: CACACTTCAAAAAGTGCCAGTGTCTTTTTCTGTGGATACAAAGTTCTAACgtatccttga ... gtggcactagTGGCAATGACAATGCTTCTGACTTTTCTG
EST: gi|15662220|gb|BI699591.1|BI699591
EST:     CACACTTCAAAAAGTGCCAGTGTCTTTTTCTGTGGATACAAAGTTCTAAC                         TGGCAATGACAATGCTTCTGACTTTTCTG
genomic: CACACTTCAAAAAGTGCCAGTGTCTTTTTCTGTGGATACAAAGTTCTAACgtatccttga ... gtggcactagTGGCAATGACAATGCTTCTGACTTTTCTG
EST: gi|254343634|gb|GR857390.1|GR857390
EST:     CACACTTCAAAAAGTGCCAGTGTCTTTTTCTGTGGATACAAAGTTCTAAC                         TGGCAATGACAATGCTTCTGACTTTTCTG
genomic: CACACTTCAAAAAGTGCCAGTGTCTTTTTCTGTGGATACAAAGTTCTAACgtatccttga ... gtggcactagTGGCAATGACAATGCTTCTGACTTTTCTG
EST: gi|298173787|gb|HO017123.1|HO017123
EST:     CACACTTCAAAAAGTGCCAGTGTCTTTTTCTGTGGATACAAAGTTCTAAC                         TGGCAATGACAATGCTTCTGACTTTTCTG
genomic: CACACTTCAAAAAGTGCCAGTGTCTTTTTCTGTGGATACAAAGTTCTAACgtatccttga ... gtggcactagTGGCAATGACAATGCTTCTGACTTTTCTG