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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTATTCATCGCATTCCAACATTCTCTTCTTCTCACTCAAACTTTCCCTCTCTGCGCCGTTCCTCTCAAATGGATGCACCAATGGAGTTTTGGGgtaacttcttgttttctctcttcctttcccttcgtatccatcatttcctttctattttcttcaaatccgatcgatttctctacacttcgtatcgtcatcg...

Basic information

species Glycine max
transcript GLYMA12G09000.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298184800|gb|HO030013.1|HO030013
EST:     TCCCTCTCTGCGCCGTTCCTCTCAAATGGATGCACCAATGGAGTTTTGGG                         GTGTTGAGGTTAAGGTTGGGCAGACTGTGACGGTTGACCCAATGGATCCTG
genomic: TCCCTCTCTGCGCCGTTCCTCTCAAATGGATGCACCAATGGAGTTTTGGGgtaacttctt ... tgaaatttagGTGTTGAGGTTAAGGTTGGGCAGACTGTGACGGTTGACCCAATGGATCCTG
EST: gi|19268763|gb|BM885019.1|BM885019
EST:     TCCCTCTCTGCGCCGTTCCTCTCAAATGGATGCACCAATGGAGTTTTGGG                         GTGTTGAGGTTAAGGTTGGGCAGACTGTGACGGTTGACCCAATGGATCCTG
genomic: TCCCTCTCTGCGCCGTTCCTCTCAAATGGATGCACCAATGGAGTTTTGGGgtaacttctt ... tgaaatttagGTGTTGAGGTTAAGGTTGGGCAGACTGTGACGGTTGACCCAATGGATCCTG
EST: gi|15662220|gb|BI699591.1|BI699591
EST:     CCTCTCAAATGGATGCACCAATGGAGTTTTGGG                         GTGTTGAGGTTAAGGTTGGGCAGACTGTGACGGTTGACCCAATGGATCCTG
genomic: CCTCTCAAATGGATGCACCAATGGAGTTTTGGGgtaacttctt ... tgaaatttagGTGTTGAGGTTAAGGTTGGGCAGACTGTGACGGTTGACCCAATGGATCCTG
EST: gi|254343634|gb|GR857390.1|GR857390
EST:     CAAATGGATGCACCAATGGAGTTTTGGG                         GTGTTGAGGTTAAGGTTGGGCAGACTGTGACGGTTGACCCAATGGATCCTG
genomic: CAAATGGATGCACCAATGGAGTTTTGGGgtaacttctt ... tgaaatttagGTGTTGAGGTTAAGGTTGGGCAGACTGTGACGGTTGACCCAATGGATCCTG
EST: gi|298173787|gb|HO017123.1|HO017123
EST:     TCCCTCTCTGCGCCGTTCCTCTCAAATGGATGCACCAATGGAGTTTTGGG                         GTGTTGAGGTTAAGGTTGGGCAGACTGTGACGGTTGACCCAATGGATCCTG
genomic: TCCCTCTCTGCGCCGTTCCTCTCAAATGGATGCACCAATGGAGTTTTGGGgtaacttctt ... tgaaatttagGTGTTGAGGTTAAGGTTGGGCAGACTGTGACGGTTGACCCAATGGATCCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATTTATTCATCGCATTCCAACATTCTCTTCTTCTCACTCAAACTTTCCCTCTCTGCGCCGTTCCTCTCAAATGGATGCACCAATGGAGTTTTGGGgtaacttcttgttttctctcttcctttcccttcgtatccatcatttcctttctattttcttcaaatccgatcgatttctctacacttcgtatcgtcatcg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcccttc