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gtgaggatcaatgtttcttttgaacttactatttttttagttgattgacttgatttggttactcaaaggatgttttattatctatgattttgacagATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG
species | Glycine max |
transcript | GLYMA12G09000.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGCAATGACAATGCTTCTGACTTTTCTG ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATGEST: gi|298197480|gb|HO044959.1|HO044959
genomic: TGGCAATGACAATGCTTCTGACTTTTCTGgtgaggatca ... attttgacagATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG
EST: GTTCTAACTGGCAATGACAATGCTTCTGACTTTTCTG ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATGEST: gi|19268763|gb|BM885019.1|BM885019
genomic: GTTCTAACTGGCAATGACAATGCTTCTGACTTTTCTGgtgaggatca ... attttgacagATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG
EST: TGGCAATGACAATGCTTCTGACTTTTCTG ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATGEST: gi|15662220|gb|BI699591.1|BI699591
genomic: TGGCAATGACAATGCTTCTGACTTTTCTGgtgaggatca ... attttgacagATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG
EST: TGGCAATGACAATGCTTCTGACTTTTCTG ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATGEST: gi|254343634|gb|GR857390.1|GR857390
genomic: TGGCAATGACAATGCTTCTGACTTTTCTGgtgaggatca ... attttgacagATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG
EST: TGGCAATGACAATGCTTCTGACTTTTCTG ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATGEST: gi|298173787|gb|HO017123.1|HO017123
genomic: TGGCAATGACAATGCTTCTGACTTTTCTGgtgaggatca ... attttgacagATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG
EST: TGGCAATGACAATGCTTCTGACTTTTCTG ATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG
genomic: TGGCAATGACAATGCTTCTGACTTTTCTGgtgaggatca ... attttgacagATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG
tgattgacttgatttggttactcaaaggatgttttattatctatgattttgacagATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG
atgttttattatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggatcaatgtttcttttgaacttactatttttttagttgattgacttgatttggttactcaaaggatgttttattatctatgattttgacagATAGTAGTGAAGAGGACGAGGAACTTGCATTGGAGGGACAAGATAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG