1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtgtgtgtttatagttagctttttgtgatgtttcagtgtcaattgttgctttcatgtgctgactattgactaactagctgtttctgtgtgccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGGTTTTCACCTA
species | Glycine max |
transcript | GLYMA12G08650.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATG GCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|298186237|gb|HO036870.1|HO036870
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATG GCCCGACGACAGTTTCTGTCAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|298176316|gb|HO023017.1|HO023017
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATG GCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|298199533|gb|HO042896.1|HO042896
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATG GCCCGGCGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|13125498|gb|BG316068.1|BG316068
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATG GCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|20812682|gb|BQ297160.1|BQ297160
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATG GCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|15338249|gb|BI498905.1|BI498905
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATG GCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|10234755|gb|BE803643.1|BE803643
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATG GCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|298167696|gb|HO012959.1|HO012959
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATG GCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|298183453|gb|HO028666.1|HO028666
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATG GCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|213589887|gb|DB969652.1|DB969652
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATG GCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|31311151|gb|CD396354.1|CD396354
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: CAAGAAGACGATG GCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|15813274|gb|BI785549.1|BI785549
genomic: CAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: CCACTCTCATCCAAGAAGACGATG GCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|6725661|gb|AW310060.1|AW310060
genomic: CCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATG GCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|20075645|gb|BQ094428.1|BQ094428
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATG GCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|298198689|gb|HO042052.1|HO042052
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATG GCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|10842968|gb|BF066325.1|BF066325
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAATAAGACGATG GCCCAACGACAGTTTCTGTTAGCATCACTGGCATTACTCCGGGGCTTCATGEST: gi|15203517|gb|BI426285.1|BI426285
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATG GCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|209722432|gb|BW668734.1|BW668734
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATG GCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|298181273|gb|HO022712.1|HO022712
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGGAGACGATG GCCCGACGACAGTTTTTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|213601162|gb|DB956484.1|DB956484
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATG GCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|15337749|gb|BI498405.1|BI498405
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATG GCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|15664273|gb|BI701644.1|BI701644
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATG GCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|24136621|gb|BU927131.1|BU927131
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATG GCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|8670432|gb|BE191539.1|BE191539
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATG GCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|8283837|gb|BE021396.1|BE021396
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATG GCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGEST: gi|298163596|gb|HO012329.1|HO012329
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
EST: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATG GCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
genomic: GGGGACCTCCGCCGTCGAAGGCGTCGCCACTCTCATCCAAGAAGACGATGgttcgtcctc ... ccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATG
ttgctttcatgtgctgactattgactaactagctgtttctgtgtgccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGGTTTTCACCTA
gactaac putative branch site (score: 1)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtgtttatagttagctttttgtgatgtttcagtgtcaattgttgctttcatgtgctgactattgactaactagctgtttctgtgtgccatgagtagGCCCGACGACAGTTTCTGTTAGCATCACTGGCCTTACTCCGGGGCTTCATGGTTTTCACCTA
gtgtgtg
- - - - - - - - - - ttttgtg
- - - - - - - - - - - - - - - -ttcagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtttctg