Sequence
atgc intronic sequence ATGC exonic sequenceTCTTTACGAAAACAGGGTCTTGGTGTTAGTCCCATTGTTCAACAAAACCAAGAGTTTAGCATTCAAAATGAAGATTTCCCAGCTTTACCAGGATTCAAAGgtgtagtatgccttatactttggagtgtaaagagtattcttagagagatgggttttctggatctgtatgcatgtttactttcagtgttttgttttattac...
Basic information
species | Glycine max |
transcript | GLYMA12G07970.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G07970.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g03940.t01 (Vitis vinifera), 5'ss of exon 7
TCTTTACGAAAACAGGGTCTTGGTGTTAGTCCCATTGTTCAACAAAACCAAGAGTTTAGCATTCAAAATGAAGATTTCCCAGCTTTACCAGGATTCAAAGgtg-tagt--atgccttatactt--tggagtgtaaagagtattcttagagagatgggttttctggatctgtatgcatgtttactttcagtgttttgttttattac
|| | ||||||| |||||||| |||||||| ||||||||||| ||||||||||| ||||| |||||||| ||||| ||||||||||| ||||| ||||||| | || || | || | | | | | | |||| | || || | | | | || ||| | | | | |
TCCCTGAGAAAACAAGGTCTTGGAGTTAGTCCTATTGTTCAACAGAACCAAGAGTTCAGCATCCAAAATGAGGATTTTCCAGCTTTACCGGGATTTAAAGgtgcttgttcattcttttgagctaatttattctgtgatttattttcagcctaatatggacattaattgcttgctataaactataatcaatatctcatagt-----
upper sequence: GLYMA12G07970.2 (Glycine max), 5'ss of exon 7
lower sequence: EFJ06690 (Selaginella moellendorffii), 5'ss of exon 7
--TCTTTACGAAAACAGGGTCTTGGTGTTAGTCCCATTGTTCAACAAAACCAAGAGTTTAGCATTCAAAATGAAGATTTCCCAGCTTTACCAGGATTCAAAGgtgtagtatgccttatactttggagtgtaaagagtattcttagagagatgggttttctggatctgtatgcatgtttactttcagtgttttgttttattac
| || |||||||| || || | | ||| |||||||| || ||||||||||| ||||| ||||||||||| || ||||| || ||||||||| ||| | ||| ||| || | | || || | | ||| || |
CCGCATTCCGAAAACAAGGC------GTCAACTCGCTTGGCCAACAAAATCAGGAGTTTAGCATACAAAACGAAGATTTCCCCGCCTTACCTGGTTTCAAAGgttcagttcgtctt----cttgttgtctgatctgtgagct-aaaacgataaaacttgtcag---------------------------------------
upper sequence: GLYMA12G07970.2 (Glycine max), 5'ss of exon 7
lower sequence: EFJ16761 (Selaginella moellendorffii), 5'ss of exon 5
--TCTTTACGAAAACAGGGTCTTGGTGTTAGTCCCATTGTTCAACAAAACCAAGAGTTTAGCATTCAAAATGAAGATTTCCCAGCTTTACCAGGATTCAAAGgtgtagtatgccttatactttggagtgtaaagagtattcttagagagatgggttttctggatctgtatgcatgtttactttcagtgttttgttttattac
| || |||||||| || || | | ||| |||||||| || ||||||||||| ||||| ||||||||||| || ||||| || ||||||||| ||| | ||| | ||| || | | || || | | | ||| |
CCGCATTCCGAAAACAAGGC------GTCAACTCGCTTGGCCAACAAAATCAGGAGTTTAGCATACAAAACGAAGATTTCCCCGCCTTACCTGGTTTCAAAGgttcagtccgtcttcttctt----gtctgatctgtgagctaaaacgagagaacttttcag----------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254336500|gb|GR842679.1|GR842679EST: AGAGTTTAGCATTCAAAATGAAGATTTCCCAGCTTTACCAGGATTCAAAG GTGGTAATGCAGATTATGCTATGGATATGCACCAGAAAGAACAACTTCATG
genomic: AGAGTTTAGCATTCAAAATGAAGATTTCCCAGCTTTACCAGGATTCAAAGgtgtagtatg ... atttgtgcagGTGGTAATGCAGATTATGCTATGGATATGCACCAGAAAGAACAACTTCATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTTTACGAAAACAGGGTCTTGGTGTTAGTCCCATTGTTCAACAAAACCAAGAGTTTAGCATTCAAAATGAAGATTTCCCAGCTTTACCAGGATTCAAAGgtgtagtatgccttatactttggagtgtaaagagtattcttagagagatgggttttctggatctgtatgcatgtttactttcagtgttttgttttattac
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