Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGACCTTTGGGTCTCCATGGTCTGATGAATCAGCTAAGGGCGATCCAGAGTTTACTGTGCCACAATGTTATTATGCCAAACAGCCACCTGCTCTACATgtgagatatttacattatgttttttataatttcatttccctattttcaaaccttttctttgggctaacttttcattattgcatgatgcag

Basic information

species Glycine max
transcript GLYMA12G07970.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07970.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv06s0004g03940.t01 (Vitis vinifera), 5'ss of exon 10
CAAGACCTTTGGGTCTCCATGGTCTGATGAATCAGCTAAGGGCGATCCAGAGTTTACTGTGCCACAATGTTATTATGCCAAACAGCCACCTGCTCTACATgtgagatatttacattatgttttttataatttcatttccctattttcaaaccttttctttgggctaacttttcattattgcatgatgcag
|||||| ||||| || || |||||||| ||  |||| || || ||||||||||| |  ||||| || ||||||||||| ||||| |||||||||||||||||  | |  |   ||  |||| |||| ||||||   ||  |  | |    | |||   ||  | | | |     || | |  || |||||
CAAGACTTTTGGTTCCCCGTGGTCTGACGAGCCAGCCAAAGGAGATCCAGAGTTCAGCGTGCCTCAGTGTTATTATGCTAAACAACCACCTGCTCTACATgtatgttgctattatcgtgttgttta-aatttc---tctatgctcttgggcatttctcttttg-tgattgccacttttggtttgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16348977|gb|BI974572.1|BI974572
EST:     AGTTTACTGTGCCACAATGTTATTATGCCAAACAGCCACCTGCTCTACAT                         CAAGGTTATTTTTCAAAGTTTTCGGTGGAAACATTGTTTTACTTATTTTAC
genomic: AGTTTACTGTGCCACAATGTTATTATGCCAAACAGCCACCTGCTCTACATgtgagatatt ... catgatgcagCAAGGTTATTTTTCAAAGTTTTCGGTGGAAACATTGTTTTACTTATTTTAC
EST: gi|254336501|gb|GR842680.1|GR842680
EST:     AGTTTACTGTGCCACAATGTTATTATGCCAAACAGCCACCTGCTCTACAT                         CAAGGTTATTTTTCAAAGTTTTCGGTGGAAACATTGTTTTACTTATTTTAC
genomic: AGTTTACTGTGCCACAATGTTATTATGCCAAACAGCCACCTGCTCTACATgtgagatatt ... catgatgcagCAAGGTTATTTTTCAAAGTTTTCGGTGGAAACATTGTTTTACTTATTTTAC