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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgcatgatcaaattgtttgtacgtttcatgcatgttgaatatataattttttcccctttaatagagttgactgtggtaaccaacattttcttgacgcagGATCTCCACAGGTAATTTCAATGCTAGGAAATTCTTATCCTAGTGGGGGTCCACTTTCCCAAAGCCATGTTCAAGCAGTGAGTAACTTGAACTCAATGGG

Basic information

species Glycine max
transcript GLYMA12G07970.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07970.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv06s0004g03940.t01 (Vitis vinifera), 3'ss of exon 5
ttgcatgatcaaa--ttgtttgtacgtttcatgcatgttgaatatataattttttcccctttaatagagttgactgtggtaaccaacattttcttg-acgcagGATCTCCACAGGTAATTTCAATGCTAGGAAATTCTTATCCT---AGTGGGGGTCCACTTTCCCAAAGCCATGTTCAAGCAGTGAGTAACTTGAACTCAATGGG
    ||| | |     | || ||       |   |||   ||| ||||   ||      | | |||   |   || |  | |   ||| |||  || |  ||| |||||||||||| ||||| |||||||||||||| ||||||     ||| |||||| | || ||| ||||||| ||| |||| | |||  ||| ||| ||   
---aatggtgaggggcttttagtgaaaagaagaaatggataatttataggcttactagttgtgatattatctgcttttatgaatgacacttttctgcattcagCATCTCCACAGGTGATTTCTATGCTAGGAAATTCCTATCCTTCTGCTGGAGGTCCATTATCTCAAGGCCATGTCCAAACAGTCAATAATCTGAGCTCGAT---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15664517|gb|BI701888.1|BI701888
EST:     TTTAGGTATGCAAGGACCGAATCGATTGATGAGTGGTGTGCTTCCACAAG                         GATCTCCACAGGTAATTTCAATGCTAGGAAATTCTTATCCTAGTGGGGGTC
genomic: TTTAGGTATGCAAGGACCGAATCGATTGATGAGTGGTGTGCTTCCACAAGgtatgcattt ... cttgacgcagGATCTCCACAGGTAATTTCAATGCTAGGAAATTCTTATCCTAGTGGGGGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattttttcccctttaatagagttgactgtggtaaccaacattttcttgacgcagGATCTCCACAGGTAATTTCAATGCTAGGAAATTCTTATCCTAGTGGGGGTCCACTTTCCCAAAGCCATGTTCAAGCAGTGAGTAACTTGAACTCAATGGG
                                       cattttctt  CT-rich tract
            tttaataga  TA-rich tract