1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtggctttaaaatctaaatatcacttgctttttcattgaattgcttgttattttataattaaatataaaaataatcttctttgcagCATGCCCAAAGATGAAGCACAATTTTACGCCGCCAGTGAGCT
species | Glycine max |
transcript | GLYMA12G07970.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTTTTACTTATTTTACAG CATGCCCAAAGATGAAGCACAATTTTACGCCGCCAGTGAGCTEST: gi|16348977|gb|BI974572.1|BI974572
genomic: GTTTTACTTATTTTACAGgtggctttaa ... ttctttgcagCATGCCCAAAGATGAAGCACAATTTTACGCCGCCAGTGAGCT
EST: GGTTATTTTTCAAAGTTTTCGGTGGAAACATTGTTTTACTTATTTTACAG CATGCCCAAAGATGAAGCACAATTTTACGCCGCCAGTGAGCTEST: gi|254336501|gb|GR842680.1|GR842680
genomic: GGTTATTTTTCAAAGTTTTCGGTGGAAACATTGTTTTACTTATTTTACAGgtggctttaa ... ttctttgcagCATGCCCAAAGATGAAGCACAATTTTACGCCGCCAGTGAGCT
EST: GGTTATTTTTCAAAGTTTTCGGTGGAAACATTGTTTTACTTATTTTACAG CATGCCCAAAGATGAAGCACAATTTTACGCCGCCAGTGAGCT
genomic: GGTTATTTTTCAAAGTTTTCGGTGGAAACATTGTTTTACTTATTTTACAGgtggctttaa ... ttctttgcagCATGCCCAAAGATGAAGCACAATTTTACGCCGCCAGTGAGCT
ttcattgaattgcttgttattttataattaaatataaaaataatcttctttgcagCATGCCCAAAGATGAAGCACAATTTTACGCCGCCAGTGAGCT
tcttctttgc CT-rich tract
ttgttattttataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggctttaaaatctaaatatcacttgctttttcattgaattgcttgttattttataattaaatataaaaataatcttctttgcagCATGCCCAAAGATGAAGCACAATTTTACGCCGCCAGTGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC