1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CATGCCCAAAGATGAAGCACAATTTTACGCCGCCAGTGAGCTgtatgcccatttcctccaatctgtcctttttgtttcttttttatttttggatgatttgagcttgcttctaatttttataatttgggtagaattactcgat...
species | Glycine max |
transcript | GLYMA12G07970.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CAGCATGCCCAAAGATGAAGCACAATTTTACGCCGCCAGTGAGCT TTACAACAGAGGTTGGTTTTATCACAAAGAACATCGTTTGTGGTTTATAAGEST: gi|13790034|gb|BG652625.1|BG652625
genomic: CAGCATGCCCAAAGATGAAGCACAATTTTACGCCGCCAGTGAGCTgtatgcccat ... ttgctcgcagTTACAACAGAGGTTGGTTTTATCACAAAGAACATCGTTTGTGGTTTATAAG
EST: CATGCCCAAAGATGAAGCACAATTTTACGCCGCCAGTGAGCT TTACAACAGAGGTTGGTTTTATCACAAAGAACATCGTTTGTGGTTTATAAGEST: gi|16348977|gb|BI974572.1|BI974572
genomic: CATGCCCAAAGATGAAGCACAATTTTACGCCGCCAGTGAGCTgtatgcccat ... ttgctcgcagTTACAACAGAGGTTGGTTTTATCACAAAGAACATCGTTTGTGGTTTATAAG
EST: CATGCCCAAAGATGAAGCACAATTTTACGCCGCCAGTGAGCT TTACAACAGAGGTTGGTTTTATCACAAAGAACATCGTTTGTGGTTTATAAGEST: gi|254336501|gb|GR842680.1|GR842680
genomic: CATGCCCAAAGATGAAGCACAATTTTACGCCGCCAGTGAGCTgtatgcccat ... ttgctcgcagTTACAACAGAGGTTGGTTTTATCACAAAGAACATCGTTTGTGGTTTATAAG
EST: CATGCCCAAAGATGAAGCACAATTTTACGCCGCCAGTGAGCT TTACAACAGAGGTTGGTTTTATCACAAAGAACATCGTTTGTGGTTTATAAG
genomic: CATGCCCAAAGATGAAGCACAATTTTACGCCGCCAGTGAGCTgtatgcccat ... ttgctcgcagTTACAACAGAGGTTGGTTTTATCACAAAGAACATCGTTTGTGGTTTATAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGCCCAAAGATGAAGCACAATTTTACGCCGCCAGTGAGCTgtatgcccatttcctccaatctgtcctttttgtttcttttttatttttggatgatttgagcttgcttctaatttttataatttgggtagaattactcgat
- - - - AAGATG
- - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcctcc