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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATACAAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCAGCATCCATCCCTTCTAAAAAATATGACTCTTCAGTATCTCAAgtaagtttcttcttgttattaataacacaaaatcttgccagtttatattgggatgtgtgcatgttagtttgttaaaagaagccaagatattattataaca...

Basic information

species Glycine max
transcript GLYMA09G01870.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G01870.2 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g42840.1 (Oryza sativa), 5'ss of exon 7
TTGATACAAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCAGCATCCATCCCTTCTAAAAAATATGACTCTTCAGTATCTCAAgtaag-tttcttcttgttattaataacacaaaatcttgccagtttatattgggatgtgtgcatgttagtttgttaaaagaagccaagatattattataaca
  || ||||||||||||||||| ||||| || ||||||||||| || || ||  |    ||||| ||  | || ||||| ||||| || || ||||||||||||| | | ||    || |   |         | ||  ||  | ||  |    |  ||   |   | | ||     | |    | || | ||||  |   
CCGACACAAAACATGATGGGAAAATTGATAAAGAAGAATGGCGCAATCTAGTTCTCAGACATCCTTCTTTACTGAAAAACATGACACTCCAATATCTCAAgtaagatatgttaaacttgtctgtgtatttctctatttgcaactgatgatcatttacgtttctccca-tctggagctatatcataggacactattgcattt

upper sequence: GLYMA09G01870.2 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G112672_T02 (Zea mays), 5'ss of exon 7
TTGATACAAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCAGCATCCATCCCTTCTAAAAAATATGACTCTTCAGTATCTCAAgtaag---tttcttcttgttattaataacacaaaatcttgccagtttatattgggatgtgtgcatgttagtttgttaaaagaagccaagatattattataaca--------------------------------------------------------------------------------------------
  || ||||| ||||||||||| |||||||| ||||||||||| ||  | ||  ||  |||||| ||  |  | || || ||||| || || |||||||||||||   ||      | ||    ||      || |||    || |   | |   |       |  |||  |    |  |       ||||| ||| | ||||                                                                                            
CAGACACAAAGCATGATGGGAAAATTGACAAAGAAGAATGGCGCAATTTAGTAGTGAGGCATCCCTCTTTATTGAAGAACATGACACTACAATATCTCAAgtaagatattctaatcttttgcgtatgctgttaactctgtttagctggaaataacaaagaca-acattaaat-accacgatttatttagataatatcagaacacatgcgattatcctgaatgagctagtattgtaaattgtagttctacttcaaccaaatcaatttatggttctaatcatgctaactttgtgcag

upper sequence: GLYMA09G01870.2 (Glycine max), 5'ss of exon 8
lower sequence: AT4G26570.2 (Arabidopsis thaliana), 5'ss of exon 8
TTGATACAAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCAGCATCCATCCCTTCTAAAAAATATGACTCTTCAGTATCTCAAgtaagtttcttcttgttattaataacacaaaatcttgccagtttatattgggatgtgtgc-atgttagtttgttaaaag-aagccaagatattat-tataaca
 ||||||||||||||| |||| ||| || |||||||| ||| ||| ||||||  |   |||||| ||||||||||| ||||||||||| |||||||| |||| |||| ||       |  | | |  | |  | | | || |  |  ||   || | | |  |||||  || |||| |   | |   |||||| | |  |   
CTGATACAAAACATGACGGGAGGATCGATAAGGAAGAGTGGAGAACCCTTGTTCTCAGGCATCCTTCCCTTCTAAAGAATATGACTCTCCAGTATCTTAAgtgagttcctaa--accaagacttatccgaggtttaggcaatgcaacttccaattttttctgtgtta--ttattaacaccgatctctgatattgtgtgcag--

upper sequence: GLYMA09G01870.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s0194g00040.t01 (Vitis vinifera), 5'ss of exon 2
TTGATACAAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCAGCATCCATCCCTTCTAAAAAATATGACTCTTCAGTATCTCAAgtaagtttcttcttgttattaataacacaaaatct---tgccagtttatattgggatgtgtgcatgttagtttgttaaaagaagccaagatattattataaca
                                 |||||||||||| |||||| ||||  |||||||| ||| | || |||||||| ||||| || || |||||||||             |        |  ||    ||   | |   | ||| ||  ||    | || ||  |       | ||   |   | |  | |  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAATGGCGAAGCCTTGTTTTGCGACATCCATCTCTTTTGAAGAATATGACCCTTCAATACCTAAAgtaagttctcctcctcctccaccctttttatttccaaatgatggatggaactggcatccgtttg-gctatttgctgctggagatcctttaccctttagtga--