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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagtgactaatatttattaagattttagatatcttctagccaacaaaattagaaaggaaagagtatttgtaaaattatagatatctgttatttccctttctacatttgttattgatagtaatttatatggttgttggggattcctaactttcccttttttcagTTTCATTCCAATTGTATGATCTCAAACAACAAGGATTTATTCAGAGACAGGAG

Basic information

species Glycine max
transcript GLYMA09G01870.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G01870.2 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os12g40510.1 (Oryza sativa), 3'ss of exon 5
gtaagagtgactaatatttattaagattttagatatcttctagccaacaaaattagaaaggaaagagtatttgtaaaattatagatatctgttatttccctttctac--atttgttattgatagtaatttatatggttgttggggattcctaactttcccttttttcagTTTCATTCCAATTGTATGATCTCAAACAACAAGGATTTATTCAGAGACAGGAG
                                                        ||||   | ||| |   |   ||  |      | | | ||  | | | |||  || | || |  | |  || || |   |  | |  | | |             |||| ||||||||||||| || ||||||||||| |||||||| | |||| ||||||| |||
--------------------------------------------------------aaagttgatagtctgacttctatgctgtcctccaggttttctcttgtttacttatcttttctcaacaaaaaattctgaagaagctatgcaat-------------ttttgcagTTTCATTCCAGTTATATGATCTCAAGCAACAAGGCTATATTGAGAGACAAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattgatagtaatttatatggttgttggggattcctaactttcccttttttcagTTTCATTCCAATTGTATGATCTCAAACAACAAGGATTTATTCAGAGACAGGAG
                                 tcctaac  putative branch site (score: 1)
                                ttcctaactttccctt  CT-rich tract
      atagtaatttatat  TA-rich tract