Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCATTCCAATTGTATGATCTCAAACAACAAGGATTTATTCAGAGACAGGAGgtaatttaatttattcataaatgatgttgaataaatggagttttgatcactcaccatgtaggactactattctatagtgtcatagtgttatataagttat...

Basic information

species Glycine max
transcript GLYMA09G01870.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G01870.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os12g40510.1 (Oryza sativa), 5'ss of exon 6
TTTCATTCCAATTGTATGATCTCAAACAACAAGGATTTATTCAGAGACAGGAGgtaat----ttaatttattcat-aaatgatgttgaataaa--tggagttttgatcactcaccatgtaggactactattctatagtgtcatagtgttatataagttat
|||||||||| || ||||||||||| |||||||| | |||| ||||||| |||||| |      || ||| ||||   |   || |   | ||  | |  | |||     ||   |||    || ||  ||| ||    |||   | || | |       
TTTCATTCCAGTTATATGATCTCAAGCAACAAGGCTATATTGAGAGACAAGAGgtattgatgccaaattactcattgcacagtgctccttcaagctagcatgttggcttgtctatatggctcac-acacttcgattaattcaacattttctttt------