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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agttactttgaaatcaatcacatgccatatacatttaatatgatcccttttagaaatgtatttgtgctattcatgatttttatattgttacattttgtagGTGTTTGACTTGTTTGACACAAAGCATAGTGGAATACTTGATTTCAAAGAGTTTGCACTTGCTCTCTCTGTCTTTCATCCCAGCGCATCAATTGATGATA

Basic information

species Glycine max
transcript GLYMA09G01870.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G01870.2 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G173424_T02 (Zea mays), 3'ss of exon 4
------agttactttgaaatcaatcacatgccatatacatttaatatgatcccttttagaaatgtatttgtgctattcatgatttttatattgttacattttgtagGTGTTTGACTTGTTTGACACAAAGCATAGTGGAATACTTGATTTCAAAGAGTTTGCACTTGCTCTCTCTGTCTTTCATCCCAGCGCATCAATTGATGATA
      | |||  |  | |  |||       | |  |  ||   | || |  ||  || ||| ||||   |  | | | | || |||    | ||     |||||||| ||||| || |||||||||||||| ||||||||  | |  ||  |||| ||||| | ||||||||| || |||||||| |  ||  |  ||||||| |
tagaaaaattagctgcacaaaaattgtggatccttgatcttgcttttggttactgatataaaagtat--atcatgtccctaatattt----tcttgtccattgtagGTATTTGATTTATTTGACACAAAGCACAGTGGAATTTTGGGATTTGAAGAATTTGCTCGTGCTCTCTCAGTATTTCATCCTAATGCTCCCCTTGATGAGA

upper sequence: GLYMA09G01870.2 (Glycine max), 3'ss of exon 4
lower sequence: AT4G26570.1 (Arabidopsis thaliana), 3'ss of exon 5
------agttactttgaaatcaatcacatgccatatacatttaatatgatcccttttagaaatgtatttgtgctattcatgatttttatattgttacattttgtagGTGTTTGACTTGTTTGACACAAAGCATAGTGGAATACTTGATTTCAAAGAGTTTGCACTTGCTCTCTCTGTCTTTCATCCCAGCGCATCAATTGATGATA
        ||  |||  ||||||     |    ||| |||||   | ||||| ||||  ||                 || | ||         |||   |   |||| || || ||||||||||||||||||| ||||||||| |  ||  | |||||||| | ||||||||||||||||||||| |  ||  | || || || |
gtatgttcttcttttttaatcaaaagactttgttatccatttgccaagatcctttttgaaag----------------ataactt----gacagtaccaatcacagGTATTCGATTTGTTTGACACAAAGCATAATGGAATACTGGGGTTTGAGGAGTTTGCGCGTGCTCTCTCTGTCTTTCATCCAAATGCTCCCATAGAAGACA

upper sequence: GLYMA09G01870.2 (Glycine max), 3'ss of exon 4
lower sequence: AT4G26570.2 (Arabidopsis thaliana), 3'ss of exon 5
------agttactttgaaatcaatcacatgccatatacatttaatatgatcccttttagaaatgtatttgtgctattcatgatttttatattgttacattttgtagGTGTTTGACTTGTTTGACACAAAGCATAGTGGAATACTTGATTTCAAAGAGTTTGCACTTGCTCTCTCTGTCTTTCATCCCAGCGCATCAATTGATGATA
        ||  |||  ||||||     |    ||| |||||   | ||||| ||||  ||                 || | ||         |||   |   |||| || || ||||||||||||||||||| ||||||||| |  ||  | |||||||| | ||||||||||||||||||||| |  ||              
gtatgttcttcttttttaatcaaaagactttgttatccatttgccaagatcctttttgaaag----------------ataactt----gacagTACCAATCACAGGTATTCGATTTGTTTGACACAAAGCATAATGGAATACTGGGGTTTGAGGAGTTTGCGCGTGCTCTCTCTGTCTTTCATCCAAATGCTC------------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttttagaaatgtatttgtgctattcatgatttttatattgttacattttgtagGTGTTTGACTTGTTTGACACAAAGCATAGTGGAATACTTGATTTCAAAGAGTTTGCACTTGCTCTCTCTGTCTTTCATCCCAGCGCATCAATTGATGATA
                      tattcatgatttttat  TA-rich tract