Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaattatgtatgttgacttgaagattatgccatacaaagttctttgtgctattataatcttctctatagagctatcactaactgtacttaaactcttcagACTTTCGAGGAAGTTGATACAAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCAGCATCCATCCCTTCTAAAAAATATGACTC

Basic information

species Glycine max
transcript GLYMA09G01870.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G01870.2 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os03g42840.1 (Oryza sativa), 3'ss of exon 6
-aaattatgtatgttgacttgaagattatgccatacaaagttctttgtgctattataatc-ttctctatagagctatcacta-actgtacttaaactcttcagACTTTCGAGGAAGTTGATACAAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCAGCATCCATCCCTTCTAAAAAATATGACTC
     ||  | |||  | || |  |     | |      ||  ||  |  ||||||  |   | | ||||    |||   || | || || |    |    |||| || ||||| |  || ||||||||||||||||| ||||| || ||||||||||| || || ||  |    ||||| ||  | || ||||| ||||| |
attgctacctttgtacattttacaaactgactagttgctgtgattgtttatattattctggctgtttatattattatgtttatattgcacat---tttacaagACATTTGAGGAGGCCGACACAAAACATGATGGGAAAATTGATAAAGAAGAATGGCGCAATCTAGTTCTCAGACATCCTTCTTTACTGAAAAACATGACAC

upper sequence: GLYMA09G01870.2 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G112672_T02 (Zea mays), 3'ss of exon 6
aaattatgtatgttgacttgaagattatgccatacaaagttctttgtgctattataatcttct------ctatagagctatcactaactgtacttaaactcttca-gACTTTCGAGGAAGTTGATACAAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCAGCATCCATCCCTTCTAAAAAATATGACTC
       |  | ||   |  |  | ||  ||| ||||        |||  |   |  ||  |       ||||     | | | ||| | |  |     |||  | |||||| ||||| |  || ||||| ||||||||||| |||||||| ||||||||||| ||  | ||  ||  |||||| ||  |  | || || ||||| |
-------gcttattacttaaataaatactccaaacaagtgaaaacgtgacaagttggtcagcctatgtgctatttgaatcttattaagttttttctttttctaaaagACTTTTGAGGAGGCAGACACAAAGCATGATGGGAAAATTGACAAAGAAGAATGGCGCAATTTAGTAGTGAGGCATCCCTCTTTATTGAAGAACATGACAC

upper sequence: GLYMA09G01870.2 (Glycine max), 3'ss of exon 7
lower sequence: AT4G26570.2 (Arabidopsis thaliana), 3'ss of exon 7
-----------------------aaattatgtatgttgacttgaagattatgccatacaaagttctttgtgctattataatcttctctatagagctatcactaactgtacttaaactcttcagACTTTCGAGGAAGTTGATACAAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCAGCATCCATCCCTTCTAAAAAATATGACTC
                         ||  | |||  |   |  |   || |   |||   |  || |  |   | |  |   |    || ||||   |  |||| | |  |     |   ||||| || ||||||| ||||||||||||||| |||| ||| || |||||||| ||| ||| ||||||  |   |||||| ||||||||||| ||||||||||
gtgtggttccttcctaccctgctcgatactatattcttgttccactgttgt---atagccaactcatgatagcagttgagaataaagtaaagagtggtttctaagtttcttc---tttcacagACATTTGAGGAAGCTGATACAAAACATGACGGGAGGATCGATAAGGAAGAGTGGAGAACCCTTGTTCTCAGGCATCCTTCCCTTCTAAAGAATATGACTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgctattataatcttctctatagagctatcactaactgtacttaaactcttcagACTTTCGAGGAAGTTGATACAAAACATGATGGGAAGATTGACAAGGAAGAATGGCGAAACCTTGTCTTGCAGCATCCATCCCTTCTAAAAAATATGACTC
                              cactaac  putative branch site (score: 1)
                                               ctcttc  putative PPT
     attataatctt  TA-rich tract