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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcaataaacatgtatttgttttctttgtttttcattctttacaatatgttgtcgttcttaatagccattaattattttcttaatcatgtttttaatgccaaaataagGTCAAGAAACACCGGCATGAGACTGTGAGCCTTCATGGTGCTGGAAAGCATCTAGCTAAGGGTGAGGCTTCCCGCATATTGCATCATCTTGTTGTTGAGG

Basic information

species Glycine max
transcript GLYMA08G20070.1
intron # 22
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20070.1 (Glycine max), 3'ss of exon 22
lower sequence: LOC_Os04g35420.1 (Oryza sativa), 3'ss of exon 19
---------------------------------------------------------------------------gtatgtcaataaacatgtatttgttttctttg----tttttcattctttac--aatatgt--tgtcgttcttaatagccattaattattttcttaatc---atgtttttaatgccaa-aataagGTCAAGAAACACCGGCATGAGACTGTGAGCCTTCATGGTGCTGGAAAGCATCTAGCTAAGGGTGAGGCTTCCCGCATATTGCATCATCTTGTTGTTGAGG
                                                                            ||   | ||  | || | |   |  ||         | ||  ||   | |   ||||||  ||| |      | | |||   | || |   ||| |    || | | |  | | |  ||| |||||||||| ||||| ||||| ||| |||| |||||||| |||||||||||||||||||| ||||| ||  |  | |||||||  ||||| ||  ||||||
gtatgtattatgcaagtaattaatgtcatttggttctgaggttcattgttatgataacatcaccagaggctacttttagtgccatggaaatatctccatggtccacaacacatcttggtttactgccggatatgtcatgttggcagggaaaaccacatactagtccattatttgaaatttatctgttactactaatcagGTCAAGAAGCACCGCCATGATACTTTGAGTCTTCATGGAGCTGGAAAGCATCTAGCTAAAGGTGAAGCAGCGAGAATATTGCGCCATCTAGTAATTGAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgttcttaatagccattaattattttcttaatcatgtttttaatgccaaaataagGTCAAGAAACACCGGCATGAGACTGTGAGCCTTCATGGTGCTGGAAAGCATCTAGCTAAGGGTGAGGCTTCCCGCATATTGCATCATCTTGTTGTTGAGG
                                     ttttaat  putative branch site (score: 3)
              attaattattttctta  TA-rich tract