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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgttatacgaagattgacttcttactaaaccttcaatggataaatcatgttcattttcaacattgcagGTATTCTGTTGTCCCCAAGACTAAAAAGTGTTTGGAGGACATTGACAAATTCATTAGGGTGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCA

Basic information

species Glycine max
transcript GLYMA08G20070.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20070.1 (Glycine max), 3'ss of exon 15
lower sequence: AT1G60930.1 (Arabidopsis thaliana), 3'ss of exon 13
gtgcgttatacgaagattgacttcttactaaaccttcaatggataaatcatgttcattttcaacattgcagGTATTCTGTTGTCCCCAAGACTAAAAAGTGTTTGGAGGACATTGACAAATTCATTAGGGTGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCA
  |   | |||  | | |  |||   |  |  |        ||   ||  || | |     ||  |||||||||||||||||| |||||||| || ||||||||||| || |||||||| || ||  |||  || |||||||||||||||||||| || ||||||||||||
--gtaatgtactgaaaatagcttaaaagaatgctgctttcaga---atgttgcttaccaaaaaatttgcagGTATTCTGTTGTTCCCAAGACAAATAAGTGTTTGGAAGATATTGACAAGTTTATCCGGGAAAACCATTTTGATGAATGTGGCATCATTTATTGTCTTTCA

upper sequence: GLYMA08G20070.1 (Glycine max), 3'ss of exon 15
lower sequence: AT1G10930.1 (Arabidopsis thaliana), 3'ss of exon 13
gtgcgttatacgaagattgacttcttactaaaccttca-atggataaatcatgttcattttcaaca---ttgcagGTATTCTGTTGTCCCCAAGACTAAAAAGTGTTTGGAGGACATTGACAAATTCATTAGGGTGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCA
               ||  ||  ||  |||||||   | |||  |  |  ||| |  ||  ||| |   |||||||||||||||||| |||||||| ||||||||| |||| ||||| |||||||| |||| ||  || ||||||||||| ||||| ||||| ||||||||||||
------------gtaatctacaactacctaaacccatatatgtttccagaatgctgcttaccaagaagtttgcagGTATTCTGTTGTTCCCAAGACAAAAAAGTGTCTGGAAGACATCGACAAATTTATTAAGGAAAACCATTTTGATGAGTGTGGAATTATATATTGTCTTTCA

upper sequence: GLYMA08G20070.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv12s0035g00400.t01 (Vitis vinifera), 3'ss of exon 9
--gtgcgttatacgaagattgacttcttactaaaccttcaatggataaatcatgttcattttcaacattgcagGTATTCTGTTGTCCCCAAGACTAAAAAGTGTTTGGAGGACATTGACAAATTCATTAGGGTGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCA
    | |||  |  |||||  | ||  |  ||||   | ||  ||| | |||   | ||| | |||||||||||||||||||| |||||||||| | ||||||| |||| ||||||||||| |||||||| |  |||||||||||||||||||| ||||| ||||||||||||
gtaagtgttgaataaagat--aatttgtgataaaatgttaa--gatta-tca--cttattgtgaacattgcagGTATTCTGTTCTCCCCAAGACAAGAAAGTGTCTGGATGACATTGACAAGTTCATTAGAGAAAATCATTTTGATGAATGTGGAATTATTTATTGTCTTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgacttcttactaaaccttcaatggataaatcatgttcattttcaacattgcagGTATTCTGTTGTCCCCAAGACTAAAAAGTGTTTGGAGGACATTGACAAATTCATTAGGGTGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCA
         tactaaa  putative branch site (score: 1)
                          ataaatcat  TA-rich tract