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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGACAATTTACATTTTCGTGAATTGCTTGCAAGGATAGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGgttggagctttggtacccttcaaattcatgcaaatcacatgataatatattgcttaaattttaattgccactgttaattttcccag

Basic information

species Glycine max
transcript GLYMA08G20070.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20070.1 (Glycine max), 5'ss of exon 14
lower sequence: AT1G10930.1 (Arabidopsis thaliana), 5'ss of exon 12
CTTGGACAATTTACATTTTCGTGAATTGCTTGCAAGGATAGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGgttggagctttggtacccttcaaattcatgcaaa-tcacat---gataatatattgcttaaattttaattgcca----ctgttaattttcccag
  |||| || ||| ||| |||||  ||||||||  || | || |||||||| ||||| ||||||||||||||||| ||||| ||| ||||||| || |||||| |  | |    | | |   |   ||| |    | || |      || ||| |  |    |||||  | |||     |  |    | | |||
TCTGGAAAACTTAAATTCTCGTGGTTTGCTTGCTCGGTTTGTTATTGATGAAGCTCATTGTGTGAGCCAATGGGGACATGACTTTCGACCAGACTACCAGgttaggccatcaaaagcttcatacaacataccctcttactttcgagaaacataattgtccttttttacgtaccaaatttttgtggaatacacag

upper sequence: GLYMA08G20070.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv12s0035g00400.t01 (Vitis vinifera), 5'ss of exon 8
CTTGGACAATTTACATTTTCGTGAATTGCTTGCAAGGATAGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGgttggagctttggtacccttc--aaattcatgcaaatcacatgataatatattgctta---aattttaattgc-cactgttaattttcccag
|||||||||||| |||  ||||||||||||| | ||||| || |||||||| || || ||||| || || ||||||||||| ||  ||||||||||||||||     || |   |  ||||   | ||||  | |   |     |  ||| ||  ||    | | |||||||   | ||| || | |||   
CTTGGACAATTTGCATGCTCGTGAATTGCTTTCTAGGATTGTTATTGATGAAGCCCATTGTGTAAGTCAGTGGGGGCATGACTTCCGACCAGATTATCAGgtgatgactatctcaatcttctggagttcactccatggatgaatttttattttttttgcagagtgttaattgtatattgtaaaatgtccag-

upper sequence: GLYMA08G20070.1 (Glycine max), 5'ss of exon 14
lower sequence: PP1S243_58V6.1 (Physcomitrella patens), 5'ss of exon 12
-CTTGGACAATTTACATTTTCGTGAATTGCTTGCAAGGATAGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGgttggagctttggtacccttcaaattcatgcaaatcacatgata-atatattgcttaaattttaattgccactgttaattttcccag------------------------------------------
 |||  | |   |  ||  ||    ||| |||||  | || ||  ||||||| ||||||||||| ||||||||||| ||||||||| | || |||||||||||      |||      |        ||||    |  |||| |  || |  |  || | | | | |    ||     ||       |                                          
TCTTACA-AGCCTGTATGATCAGAGATTACTTGCTCGAATTGTGGTTGATGAAGCTCACTGTGTAAGCCAATGGGGTCATGATTTTCGTCCTGATTATCAGgt-atgtttttaacctgcacttgccacatggttttaccatgttttatgtggtatttgagtgt-attcaagacatgcgatgacgttggaatcatgttgttatatctacttacaaacatctatgtgtacag