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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACATTGACAAATTCATTAGGGTGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGTATGGACTGTGAAAAGGTTGCTGAAAAATTACAGgttagttcttttcattagccattactttatattttgtatatttgactagaatgtatgatgtgatgaattggctgtggttttctagcttgctcttgttttt...

Basic information

species Glycine max
transcript GLYMA08G20070.1
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20070.1 (Glycine max), 5'ss of exon 16
lower sequence: GRMZM2G319573_T01 (Zea mays), 5'ss of exon 13
GGACATTGACAAATTCATTAGGGTGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGTATGGACTGTGAAAAGGTTGCTGAAAAATTACAGgttagttcttttcattagccattactttatattttgtatatttgactagaatgtatgatgtgatgaattg--gctgtggttttctagcttgctcttgttttt
|||||||||   ||| ||  |    ||||||| | | |||||||||||||| ||||| |||||| | ||||| |||||||| || || |||||| ||  ||||| ||||    | ||     |  |||||  |||||||   |   || | |   | || | |   | ||  |  |  | ||     |||| |  | |   |
GGACATTGATTTATTTATCCGCACAAATCATTCTAAAGAATGTGGCATTATATATTGCCTTTCAAGAATGGATTGTGAAAAAGTGGCAGAAAAACTAAGGgttatttctcgaaactataagctg-tttattgtttgtatggatattta-agtccttaattttacacactgtagtagcagattgaattcttgattatttagct

upper sequence: GLYMA08G20070.1 (Glycine max), 5'ss of exon 16
lower sequence: AT1G10930.1 (Arabidopsis thaliana), 5'ss of exon 14
GGACATTGACAAATTCATTAGGGTGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGTATGGACTGTGAAAAGGTTGCTGAAAAATTACAGgttagttcttttcatt---agccattactttatattttgtatatt-tgactagaatgtatgatgtgatgaattggctgtggttttctagcttgctcttgttttt
 ||||| |||||||| |||| ||  || ||||||||||| ||||| ||||| |||||||||||| | |||||||| ||||| ||  |||||   || |||||| ||  |||  ||    | || |||     |  | || |||     | ||  |||| |||      ||||||| |    |||||                  
AGACATCGACAAATTTATTAAGGAAAACCATTTTGATGAGTGTGGAATTATATATTGTCTTTCAAGAATGGACTGCGAAAAAGTCTCTGAACGGTTGCAGgttggtcatttgtatattgaaccgttatcaagttctgtgcataccacaaatattatgt-tgaaccatagaattggatactattttcag----------------

upper sequence: GLYMA08G20070.1 (Glycine max), 5'ss of exon 16
lower sequence: AT1G60930.1 (Arabidopsis thaliana), 5'ss of exon 14
GGACATTGACAAATTCATTAGGGTGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGTATGGACTGTGAAAAGGTTGCTGAAAAATTACAGgttagttcttttcattagccattactttatattttgtatatttgactagaatgtatgatgtg-atgaattggctgtggttttctagcttgctcttgttttt
 || |||||||| || ||  |||  || |||||||||||||||||||| || |||||||||||| | |||||||| ||||| ||  | |||  ||| | |||||||  |||   || ||| ||    ||| | ||  |     |  |   |  |||  || |  |        |||  | ||| |  ||            
AGATATTGACAAGTTTATCCGGGAAAACCATTTTGATGAATGTGGCATCATTTATTGTCTTTCAAGAATGGACTGCGAAAAAGTCACGGAAGCATTGCGGgttagtcgttt--gttggcctttctcgtatctgtttaaatggaggtttttacatattgtgagcgtaccacatttgttatgttccaatttcag---------

upper sequence: GLYMA08G20070.1 (Glycine max), 5'ss of exon 16
lower sequence: Vv12s0035g00400.t01 (Vitis vinifera), 5'ss of exon 10
GGACATTGACAAATTCATTAGGGTGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGTATGGACTGTGAAAAGGTTGCTGAAAAATTACAGgttagttcttttcattagccattactttatattttgtatatttgactagaatgtatgatgtgatgaattggctgtggttttctagcttgctcttgttttt----
 ||||||||||| |||||||| |  |||||||||||||||||||| ||||| |||||||||||| |  ||||||||||||| ||||||||||  ||||||||| ||   |||  ||   |||     ||||    | | | ||| || | |||| | |   ||||   |  |     || |  ||  |  || |  |  |    
TGACATTGACAAGTTCATTAGAGAAAATCATTTTGATGAATGTGGAATTATTTATTGTCTTTCAAGATTGGACTGTGAAAAAGTTGCTGAAAGGTTACAGgtttgtctcttt--ttcctcatcttgatatagaa-ggagagttgtcttgtatgtctta-aagatgtgataacataaattattcagagtattcctaatcctctgg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193549141|gb|FK505436.1|FK505436
EST:     TCTATTGTCTTTCACGTATGGACTGTGAAAAGGTTGCTGAAAAATTACAG                         GAATGTGGGCATAAATGTGCATTTTATCATGGTAGCATGGACCCTGCTCAA
genomic: TCTATTGTCTTTCACGTATGGACTGTGAAAAGGTTGCTGAAAAATTACAGgttagttctt ... cattgttcagGAATGTGGGCATAAATGTGCATTTTATCATGGTAGCATGGACCCTGCTCAA