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gttctaaattgaaaaactttaattccctattcttcaattttctttaaagaagtttactgtttcatctattaaagcaaacactctgatacttacttgcatgttatttgatcagGTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGCTTGGTTTGCTGAAATTAGTAAGTGGAATATCTGGCTTGACACAAGATGA
species | Glycine max |
transcript | GLYMA08G20060.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AACAACTGGCAGTCCGATGGCCTTTTCTCCTGATAGTGCAAATGCTAAAG GTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGCEST: gi|7638952|gb|AW733217.1|AW733217
genomic: AACAACTGGCAGTCCGATGGCCTTTTCTCCTGATAGTGCAAATGCTAAAGgttctaaatt ... atttgatcagGTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGC
EST: AACAACTGGCAGTCCGATGGCCTTTTCTCCTGATAGTGCAAATGCTAAAG GTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGCEST: gi|22523500|gb|BU082311.1|BU082311
genomic: AACAACTGGCAGTCCGATGGCCTTTTCTCCTGATAGTGCAAATGCTAAAGgttctaaatt ... atttgatcagGTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGC
EST: AACAACTGGCAGTCCGATGGGCTTTTCTCCTGATAGTGCAAATGCTAAAG GTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGCEST: gi|192312323|gb|FK005327.1|FK005327
genomic: AACAACTGGCAGTCCGATGGCCTTTTCTCCTGATAGTGCAAATGCTAAAGgttctaaatt ... atttgatcagGTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGC
EST: AACAACTGGCAGTCCGATGGCCTTTTCTCCTGATAGTGCAAATGCTAAAG GTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGCEST: gi|192312324|gb|FK005328.1|FK005328
genomic: AACAACTGGCAGTCCGATGGCCTTTTCTCCTGATAGTGCAAATGCTAAAGgttctaaatt ... atttgatcagGTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGC
EST: AACAACTGGCAGTCCGATGGCCTTTTCTCCTGATAGTGCAAATGCTAAAG GTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGCEST: gi|6482444|gb|AW201703.1|AW201703
genomic: AACAACTGGCAGTCCGATGGCCTTTTCTCCTGATAGTGCAAATGCTAAAGgttctaaatt ... atttgatcagGTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGC
EST: AACAACTGGCAGTCCGATGGCCTTTTCTCCTGATAGTGCAAATGCTAAAG GTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGC
genomic: AACAACTGGCAGTCCGATGGCCTTTTCTCCTGATAGTGCAAATGCTAAAGgttctaaatt ... atttgatcagGTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGC
tgtttcatctattaaagcaaacactctgatacttacttgcatgttatttgatcagGTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGCTTGGTTTGCTGAAATTAGTAAGTGGAATATCTGGCTTGACACAAGATGA
tacttac putative branch site (score: 1)
atctattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctaaattgaaaaactttaattccctattcttcaattttctttaaagaagtttactgtttcatctattaaagcaaacactctgatacttacttgcatgttatttgatcagGTGATCAGCAGCCAGAATGTAAAGGAGAACAACTTGATCTAGGTGTGAGGCTTGGTTTGCTGAAATTAGTAAGTGGAATATCTGGCTTGACACAAGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG