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...attagtatagaaagcagtatataattttaaatttactgacagctgatgacatgttatttttagttctgacttctgattcacccatctttttatgttgcagGGGAAAATAAAGCAGACAATGGAGAAGGCCTTTTGGGATGGTATCATGGAATCTGTGGAGGTGGACCATCCCAACTATGACCGAATTGTTCAACTTATGG
species | Glycine max |
transcript | GLYMA08G20060.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTTACTGATGAATTTGATGTCTCTGATCACATTCAAAACAGTGTTGAG GGGAAAATAAAGCAGACAATGGAGAAGGCCTTTTGGGATGGTATCATGGAAEST: gi|207833666|gb|GD805371.1|GD805371
genomic: TGTTACTGATGAATTTGATGTCTCTGATCACATTCAAAACAGTGTTGAGgttagtacct ... tatgttgcagGGGAAAATAAAGCAGACAATGGAGAAGGCCTTTTGGGATGGTATCATGGAA
EST: GTGTTACTGATGAATTTGATGTCTCTGATCACATTCAAAACAGTGTTGAG GGGAAAATAAAGCAGACAATGGAGAAGGCCTTTTGGGATGGTATCATGGAA
genomic: GTGTTACTGATGAATTTGATGTCTCTGATCACATTCAAAACAGTGTTGAGgttagtacct ... tatgttgcagGGGAAAATAAAGCAGACAATGGAGAAGGCCTTTTGGGATGGTATCATGGAA
atgacatgttatttttagttctgacttctgattcacccatctttttatgttgcagGGGAAAATAAAGCAGACAATGGAGAAGGCCTTTTGGGATGGTATCATGGAATCTGTGGAGGTGGACCATCCCAACTATGACCGAATTGTTCAACTTATGG
ttcacccatcttttt CT-rich tract
atgttatttttagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attagtatagaaagcagtatataattttaaatttactgacagctgatgacatgttatttttagttctgacttctgattcacccatctttttatgttgcagGGGAAAATAAAGCAGACAATGGAGAAGGCCTTTTGGGATGGTATCATGGAATCTGTGGAGGTGGACCATCCCAACTATGACCGAATTGTTCAACTTATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - -cagctga
- - - - - - - - - - - - - - - - - - - - - - - tgacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgac