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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGACACAAGATGATCTCCCAGAAACTTTATCTCTTAACTTCCTGAGGCTGAGGTCTGTTCAGGCTCAAATTCAGAAGATTATTGTGATTTCTACAAGgtaaatagcatcttaattctgttgagaggttatcacagcatcttaattgaataatttatgctgatgatggtactgtataaattgttgttttactaatattatctctattttgggaatggcag

Basic information

species Glycine max
transcript GLYMA08G20060.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20060.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv12s0034g02390.t01 (Vitis vinifera), 5'ss of exon 10
GCTTGACACAAGATGATCTCCCAGAAACTTTATCTCTTAACTTCCTGAGGCTGAGGTCTGTTCAGGCTCAAATTCAGAAGATTATTGTGATTTCTACAAGgtaaatagcatcttaattctgttgagaggttatcacagcatcttaattgaataatttatgctgatgatggtactgtataaattgttgttttactaa-tattatctctattttgggaatggcag
|  | ||||| ||   | | || |||||  |    |||||| ||   ||||||||  ||||||| || || ||||||||||| ||||||||||| || |||||| | | |||  | |   ||| | |  || | |   | | ||      |||| ||   |  | | |  |    || | ||  ||| | || ||  ||  | ||                  
GTATAACACAGGAATCTTTACCTGAAACACTTAAGCTTAACCTCAATAGGCTGAGAGCTGTTCAAGCCCAGATTCAGAAGATCATTGTGATTTCCACCAGgtaactgg-atcagagtggagttaaaa--ttctta---ctttttgtgctcataactttaacctaagttaatttgatacacatcattggtctattacctaagaactt-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254330913|gb|GR842178.1|GR842178
EST:     CTGAGGTCTGTTCAGGCTCAAATTCAGAAGATTATTGTGATTTCTACAAG                         CATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCC
genomic: CTGAGGTCTGTTCAGGCTCAAATTCAGAAGATTATTGTGATTTCTACAAGgtaaatagca ... ggaatggcagCATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCC
EST: gi|10847403|gb|BF070091.1|BF070091
EST:     CTGATGTCTGTTCAGGCTCAAATTCACAACATTATTGTGATTTCTACAAT                         CATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCC
genomic: CTGAGGTCTGTTCAGGCTCAAATTCAGAAGATTATTGTGATTTCTACAAGgtaaatagca ... ggaatggcagCATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCC
EST: gi|7638952|gb|AW733217.1|AW733217
EST:     CTGAGGTCTGTTCAGGCTCAAATTCAGAAGATTATTGTGATTTCTACAAG                         CATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCC
genomic: CTGAGGTCTGTTCAGGCTCAAATTCAGAAGATTATTGTGATTTCTACAAGgtaaatagca ... ggaatggcagCATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCC
EST: gi|22523500|gb|BU082311.1|BU082311
EST:     CTGAGGTCTGTTCAGGCTCAAATTCAAAAAATTATTGTGATTTCTACAAG                         CATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCC
genomic: CTGAGGTCTGTTCAGGCTCAAATTCAGAAGATTATTGTGATTTCTACAAGgtaaatagca ... ggaatggcagCATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCC
EST: gi|192312323|gb|FK005327.1|FK005327
EST:     CTGAGGTCTGTTCAGGCTCAAATTCAGAAGATTATTGTGATTTCTACAAG                         CATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCC
genomic: CTGAGGTCTGTTCAGGCTCAAATTCAGAAGATTATTGTGATTTCTACAAGgtaaatagca ... ggaatggcagCATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCC
EST: gi|192312324|gb|FK005328.1|FK005328
EST:     CTGAGGTCTGTTCAGGCTCAAATTCAGAAGATTATTGTGATTTCTACAAG                         CATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCC
genomic: CTGAGGTCTGTTCAGGCTCAAATTCAGAAGATTATTGTGATTTCTACAAGgtaaatagca ... ggaatggcagCATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCC