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gtaaatagcatcttaattctgttgagaggttatcacagcatcttaattgaataatttatgctgatgatggtactgtataaattgttgttttactaatattatctctattttgggaatggcagCATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCCTGCAGATATGGAAAACTTATTGTCTAAGTGTGCTGCACAACTCTTGGAT
species | Glycine max |
transcript | GLYMA08G20060.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTGAGGTCTGTTCAGGCTCAAATTCAGAAGATTATTGTGATTTCTACAAG CATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCCEST: gi|10847403|gb|BF070091.1|BF070091
genomic: CTGAGGTCTGTTCAGGCTCAAATTCAGAAGATTATTGTGATTTCTACAAGgtaaatagca ... ggaatggcagCATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCC
EST: CTGATGTCTGTTCAGGCTCAAATTCACAACATTATTGTGATTTCTACAAT CATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCCEST: gi|7638952|gb|AW733217.1|AW733217
genomic: CTGAGGTCTGTTCAGGCTCAAATTCAGAAGATTATTGTGATTTCTACAAGgtaaatagca ... ggaatggcagCATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCC
EST: CTGAGGTCTGTTCAGGCTCAAATTCAGAAGATTATTGTGATTTCTACAAG CATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCCEST: gi|22523500|gb|BU082311.1|BU082311
genomic: CTGAGGTCTGTTCAGGCTCAAATTCAGAAGATTATTGTGATTTCTACAAGgtaaatagca ... ggaatggcagCATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCC
EST: CTGAGGTCTGTTCAGGCTCAAATTCAAAAAATTATTGTGATTTCTACAAG CATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCCEST: gi|192312323|gb|FK005327.1|FK005327
genomic: CTGAGGTCTGTTCAGGCTCAAATTCAGAAGATTATTGTGATTTCTACAAGgtaaatagca ... ggaatggcagCATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCC
EST: CTGAGGTCTGTTCAGGCTCAAATTCAGAAGATTATTGTGATTTCTACAAG CATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCCEST: gi|192312324|gb|FK005328.1|FK005328
genomic: CTGAGGTCTGTTCAGGCTCAAATTCAGAAGATTATTGTGATTTCTACAAGgtaaatagca ... ggaatggcagCATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCC
EST: CTGAGGTCTGTTCAGGCTCAAATTCAGAAGATTATTGTGATTTCTACAAG CATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCC
genomic: CTGAGGTCTGTTCAGGCTCAAATTCAGAAGATTATTGTGATTTCTACAAGgtaaatagca ... ggaatggcagCATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCC
tggtactgtataaattgttgttttactaatattatctctattttgggaatggcagCATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCCTGCAGATATGGAAAACTTATTGTCTAAGTGTGCTGCACAACTCTTGGAT
tactaat putative branch site (score: 1)
tataaattgttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatagcatcttaattctgttgagaggttatcacagcatcttaattgaataatttatgctgatgatggtactgtataaattgttgttttactaatattatctctattttgggaatggcagCATTCTTATTCGCGGTCAGGTTCTCTTGAGTGAAAAGGCAGTAGCTAACCCTGCAGATATGGAAAACTTATTGTCTAAGTGTGCTGCACAACTCTTGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC