1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...acgccttaaaactgaaatacaatggatgtgttagaattgtttttttgctagatattactataaaaaagaattctcctctaactttattttgttctttaagGTGCTGGAGGCGGTTCCTAAGGCAAAAGAGAACAACATTTACCTTGACAAAAGCATATGATGTGCTGGGGATCAATGAGAAATCTGTCAAGTCAATGCCT
species | Glycine max |
transcript | GLYMA08G20060.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGCAATAGAATGTCAAAGCAAGCAGAATATCTTTCCAGAAAACTAGCAAG GTGCTGGAGGCGGTTCCTAAGGCAAAAGAGAACAACATTTACCTTGACAAA
genomic: CGCAATAGAATGTCAAAGCAAGCAGAATATCTTTCCAGAAAACTAGCAAGgtttattatt ... gttctttaagGTGCTGGAGGCGGTTCCTAAGGCAAAAGAGAACAACATTTACCTTGACAAA
tgctagatattactataaaaaagaattctcctctaactttattttgttctttaagGTGCTGGAGGCGGTTCCTAAGGCAAAAGAGAACAACATTTACCTTGACAAAAGCATATGATGTGCTGGGGATCAATGAGAAATCTGTCAAGTCAATGCCT
ctctaac putative branch site (score: 2)
ttctcctctaacttta CT-rich tract
atattactataaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgccttaaaactgaaatacaatggatgtgttagaattgtttttttgctagatattactataaaaaagaattctcctctaactttattttgttctttaagGTGCTGGAGGCGGTTCCTAAGGCAAAAGAGAACAACATTTACCTTGACAAAAGCATATGATGTGCTGGGGATCAATGAGAAATCTGTCAAGTCAATGCCT
- gccttaa
- - - - - - -gaaatac
- - - - - - - - - - - -ggatgtg
- - - - - - - - - - - - - - - - - - - - - - ttgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaa