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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGTGCTTAGCACAGAAAATGGAGTGAATGGTTTTACACTTGATCCTAGCCTTGGGGAGTTCATATTGACTCACCCAAACATCAAGgtacataaaaatatatttttttgatcaccttgagattggtgtagagtatccatcagttttgttaatgactaatctttatcggagaacctgattaactacc...

Basic information

species Glycine max
transcript GLYMA08G19430.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22927213|gb|BU544352.1|BU544352
EST:     CACTTGATCCTAGCCTTGGGGAGTTCATATTGACTCACCCAAACATCAAG                         ATACCAAGTAAAGGAAAGATTTATTCGGTGAATGAAGGAAATGCCAGAAAC
genomic: CACTTGATCCTAGCCTTGGGGAGTTCATATTGACTCACCCAAACATCAAGgtacataaaa ... acttgcatagATACCAAGTAAAGGAAAGATTTATTCGGTGAATGAAGGAAATGCCAGAAAC
EST: gi|254339115|gb|GR847832.1|GR847832
EST:     CACTTGATCCTAGCCTTGGGGAGTTCATATTGACTCACCCAAACATCAAG                         ATACCAAGTAAAGGAAAGATTTATTCGGTGAATGAAGGAAATGCCAGAAAC
genomic: CACTTGATCCTAGCCTTGGGGAGTTCATATTGACTCACCCAAACATCAAGgtacataaaa ... acttgcatagATACCAAGTAAAGGAAAGATTTATTCGGTGAATGAAGGAAATGCCAGAAAC
EST: gi|163921427|gb|EH038965.1|EH038965
EST:     CACTTGATCCTAGCCTTGGGGAGTTCATATTGACTCACCCAAACATCAAG                         ATACCAAGTAAAGGAAAGATTTATTCGGTGAATGAAGGAAATGCCAGAAAC
genomic: CACTTGATCCTAGCCTTGGGGAGTTCATATTGACTCACCCAAACATCAAGgtacataaaa ... acttgcatagATACCAAGTAAAGGAAAGATTTATTCGGTGAATGAAGGAAATGCCAGAAAC
EST: gi|208151927|gb|GD945630.1|GD945630
EST:     CCTAGCCTTGGGGAGTTCATATTGACTCACCCAAACATCAAG                         ATACCAAGTAAAGGAAAGATTTATTCGGTGAATGAAGGAAATGCCAGAAAC
genomic: CCTAGCCTTGGGGAGTTCATATTGACTCACCCAAACATCAAGgtacataaaa ... acttgcatagATACCAAGTAAAGGAAAGATTTATTCGGTGAATGAAGGAAATGCCAGAAAC
EST: gi|21888792|gb|BQ742005.1|BQ742005
EST:     CACTTGATCCTAGCCTTGGGGAGTTCATATTGACTCACCCAAACATCAAG                         ATACCAAGTAAAGGAAAGATTTATTCGGTGAATGAAGGAAATGCCAGAAAC
genomic: CACTTGATCCTAGCCTTGGGGAGTTCATATTGACTCACCCAAACATCAAGgtacataaaa ... acttgcatagATACCAAGTAAAGGAAAGATTTATTCGGTGAATGAAGGAAATGCCAGAAAC
EST: gi|193310611|gb|FK276775.1|FK276775
EST:     CACTTGATCCTAGCCTTGGGGAGTTCATATTGACTCACCCAAACATCAAG                         ATACCAAGTAAAGGAAAGATTTATTCGGTGAATGAAGGAAATGCCAGAAAC
genomic: CACTTGATCCTAGCCTTGGGGAGTTCATATTGACTCACCCAAACATCAAGgtacataaaa ... acttgcatagATACCAAGTAAAGGAAAGATTTATTCGGTGAATGAAGGAAATGCCAGAAAC
EST: gi|254339114|gb|GR847831.1|GR847831
EST:     CACTTGATCCTAGCCTTGGGGAGTTCATATTGACTCACCCAAACATCAAG                         ATACCAAGTAAAGGAAAGATTTATTCGGTGAATGAAGGAAATGCCAGAAAC
genomic: CACTTGATCCTAGCCTTGGGGAGTTCATATTGACTCACCCAAACATCAAGgtacataaaa ... acttgcatagATACCAAGTAAAGGAAAGATTTATTCGGTGAATGAAGGAAATGCCAGAAAC
EST: gi|208200102|gb|GD996031.1|GD996031
EST:     CCTAGCCTTGGGGAGTTCATATTGACTCACCCAAACATCAAG                         ATACCAAGTAAAGGAAAGATTTATTCGGTGAATGAAGGAAATGCCAGAAAC
genomic: CCTAGCCTTGGGGAGTTCATATTGACTCACCCAAACATCAAGgtacataaaa ... acttgcatagATACCAAGTAAAGGAAAGATTTATTCGGTGAATGAAGGAAATGCCAGAAAC
EST: gi|193333960|gb|FK301348.1|FK301348
EST:     CCTTGGGGAGTTCATATTGACTCACCCAAACATCAAG                         ATACCAAGTAAAGGAAAGATTTATTCGGTGAATGAAGGAAATGCCAGAAAC
genomic: CCTTGGGGAGTTCATATTGACTCACCCAAACATCAAGgtacataaaa ... acttgcatagATACCAAGTAAAGGAAAGATTTATTCGGTGAATGAAGGAAATGCCAGAAAC
EST: gi|208170359|gb|GD968404.1|GD968404
EST:     CCTAGCCTTGGGGAGTTCATATTGACTCACCCAAACATCAAG                         ATACCAAGTAAAGGAAAGATTTATTCGGTGAATGAAGGAAATGCCAGAAAC
genomic: CCTAGCCTTGGGGAGTTCATATTGACTCACCCAAACATCAAGgtacataaaa ... acttgcatagATACCAAGTAAAGGAAAGATTTATTCGGTGAATGAAGGAAATGCCAGAAAC