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gtatgaatttttaatttcaattgccaaacataattgctgcatttgaaaacttcaaaacagaaaattatataagtaaccaacattttgccctgttgcatatagATCTTTGGTATTTACATGGTGAAGAATGAGGCTGAAGTAAGTCTTGAAGATGCATTGCAACCTGGGAACCAAATGTTAGCAGCTGGTTACTGCATGTATG
species | Glycine max |
transcript | GLYMA08G19430.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACCCTCTGGATGGATCCTCAAACATTGACTGCGGGGTTTCTATTGGAACT ATCTTTGGTATTTACATGGTGAAGAATGAGGCTGAAGTAAGTCTTGAAGATEST: gi|254339115|gb|GR847832.1|GR847832
genomic: ACCCTCTGGATGGATCCTCAAACATTGACTGCGGGGTTTCTATTGGAACTgtatgaattt ... ttgcatatagATCTTTGGTATTTACATGGTGAAGAATGAGGCTGAAGTAAGTCTTGAAGAT
EST: TGACTGCGGGGTTTCTA-TGGAACT ATCTTTGGTATTTACATGGTGAAGAATGAGGCTGAAGTAAGTCTTGAAGATEST: gi|163921427|gb|EH038965.1|EH038965
genomic: TGACTGCGGGGTTTCTATTGGAACTgtatgaattt ... ttgcatatagATCTTTGGTATTTACATGGTGAAGAATGAGGCTGAAGTAAGTCTTGAAGAT
EST: ACCCTCTGGATGGATCCTCAAACATTGACTGCGGGGTTTCTATTGGAACT ATCTTTGGTATTTACATGGTGAAGAATGAGGCTGAAGTAAGTCTTGAAGATEST: gi|254339114|gb|GR847831.1|GR847831
genomic: ACCCTCTGGATGGATCCTCAAACATTGACTGCGGGGTTTCTATTGGAACTgtatgaattt ... ttgcatatagATCTTTGGTATTTACATGGTGAAGAATGAGGCTGAAGTAAGTCTTGAAGAT
EST: ACCCTCTGGATGGATCCTCAAACATTGACTGCGGGGTTTCTATTGGAACT ATCTTTGGTATTTACATGGTGAAGAATGAGGCTGAAGTAAGTCTTGAAGAT
genomic: ACCCTCTGGATGGATCCTCAAACATTGACTGCGGGGTTTCTATTGGAACTgtatgaattt ... ttgcatatagATCTTTGGTATTTACATGGTGAAGAATGAGGCTGAAGTAAGTCTTGAAGAT
aacttcaaaacagaaaattatataagtaaccaacattttgccctgttgcatatagATCTTTGGTATTTACATGGTGAAGAATGAGGCTGAAGTAAGTCTTGAAGATGCATTGCAACCTGGGAACCAAATGTTAGCAGCTGGTTACTGCATGTATG
aagtaac putative branch site (score: 2)
ccctgtt putative PPT
aaaacagaaaattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaatttttaatttcaattgccaaacataattgctgcatttgaaaacttcaaaacagaaaattatataagtaaccaacattttgccctgttgcatatagATCTTTGGTATTTACATGGTGAAGAATGAGGCTGAAGTAAGTCTTGAAGATGCATTGCAACCTGGGAACCAAATGTTAGCAGCTGGTTACTGCATGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG