Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcatctttagtgaggttttagctttcaattgagattttggaatatatgaacgccgtgacatcttttttctttctttctttctttttttttgctatgcagAATTCAATTGCAATTGATGAAGACCTTTTAGCAAATAGCGCCAGATCACTGGAGACCTTGGTTTCTGTAGGGATGAGATTGGGTGTCTCCACGAGGAAAT

Basic information

species Glycine max
transcript GLYMA08G19310.3
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58020769|gb|CX707511.1|CX707511
EST:     TTGGATATTTCTCATTCGGTGGAAGCACTGTAATTTGCGTTTTTGAAGAG                         AATTCAATTGCAATTGATGAAGACCTTTTAGCAAATAGCGCCAGATCACTG
genomic: TTGGATATTTCTCATTCGGTGGAAGCACTGTAATTTGCGTTTTTGAAGAGgttggtattt ... tgctatgcagAATTCAATTGCAATTGATGAAGACCTTTTAGCAAATAGCGCCAGATCACTG
EST: gi|192307706|gb|FK001650.1|FK001650
EST:     TTGGATATTTCTCATTCGGTGGAAGCACTGTAATTTGCGTTTTTGAAGAG                         AATTCAATTGCAATTGATGAAGACCTTTTAGCAAATAGCGCCAGATCACTG
genomic: TTGGATATTTCTCATTCGGTGGAAGCACTGTAATTTGCGTTTTTGAAGAGgttggtattt ... tgctatgcagAATTCAATTGCAATTGATGAAGACCTTTTAGCAAATAGCGCCAGATCACTG
EST: gi|51338331|gb|CO982197.1|CO982197
EST:     TTGGATATTTCTCATTCGGTGGAAGCACTGTAATTTGCGTTTTTGAAGAG                         AATTCAATTGCAATTGATGAAGACCTTTTAGCAAATAGCGCCAGATCACTG
genomic: TTGGATATTTCTCATTCGGTGGAAGCACTGTAATTTGCGTTTTTGAAGAGgttggtattt ... tgctatgcagAATTCAATTGCAATTGATGAAGACCTTTTAGCAAATAGCGCCAGATCACTG
EST: gi|151397882|gb|EV267755.1|EV267755
EST:     TTGGATATTTCTCATTCGGTGGAAGCACTGTAATTTGCGTTTTTGAAGAG                         AATTCAATTGCAATTGATGAAGACCTTTTAGTAAATAGCGCCAGATCACTG
genomic: TTGGATATTTCTCATTCGGTGGAAGCACTGTAATTTGCGTTTTTGAAGAGgttggtattt ... tgctatgcagAATTCAATTGCAATTGATGAAGACCTTTTAGCAAATAGCGCCAGATCACTG
EST: gi|208088889|gb|GD887775.1|GD887775
EST:     TTGGATATTTCTCATTCGGTGGAAGCACTGTAATTTGCGTTTTTGAAGAG                         AATTCAATTGCAATTGATGAAGACCTTTTAGCAAATAGCGCCAGATCACTG
genomic: TTGGATATTTCTCATTCGGTGGAAGCACTGTAATTTGCGTTTTTGAAGAGgttggtattt ... tgctatgcagAATTCAATTGCAATTGATGAAGACCTTTTAGCAAATAGCGCCAGATCACTG
EST: gi|7030330|gb|AW460113.1|AW460113
EST:     TTGGATATTTCTCATTCGGTGGAAGCACTGTAATTTGCGTTTTTGAAGAG                         AATTCAATTGCAATTGATGAAGACCTTTTAGCAAATAGCGCCAGATCATTG
genomic: TTGGATATTTCTCATTCGGTGGAAGCACTGTAATTTGCGTTTTTGAAGAGgttggtattt ... tgctatgcagAATTCAATTGCAATTGATGAAGACCTTTTAGCAAATAGCGCCAGATCACTG
EST: gi|10255364|gb|BE823130.1|BE823130
EST:     TTGGATATTTCTCATTCGGTGGAAGCACTGTAATTTGCGTTTTTGAAGAG                         AATTCAATTGCAATTGATGAAGACCTTTTAGCAAATAGCGCCAGATCATTG
genomic: TTGGATATTTCTCATTCGGTGGAAGCACTGTAATTTGCGTTTTTGAAGAGgttggtattt ... tgctatgcagAATTCAATTGCAATTGATGAAGACCTTTTAGCAAATAGCGCCAGATCACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgaacgccgtgacatcttttttctttctttctttctttttttttgctatgcagAATTCAATTGCAATTGATGAAGACCTTTTAGCAAATAGCGCCAGATCACTGGAGACCTTGGTTTCTGTAGGGATGAGATTGGGTGTCTCCACGAGGAAAT
              catcttttttctttct  CT-rich tract
                  ttttttctttctttct  TA-rich tract