1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gttggtcattgcaattaatttctttgtctgaattgttgagttcatgactatatcctgctgaaatttataccataagtttgtgaattattatctgagttacctataatctactgcctctactttcatttttgcttatagttgcagacctttattgaccagtatcttataattttattcagGTGGCATTTGTTGCAATTGGAGCTACAATGGTTGGTAGCATTACTTTTACAAAGAAAAAGGGCGACTATGTTAAGAAGGGAGATGAG
species | Glycine max |
transcript | GLYMA08G19310.3 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CGGAGAACAAGAGAGTTGTTTCAATAGTTTCAACTGTAGATTTTGGAAAG GTGGCATTTGTTGCAATTGGAGCTACAATGGTTGGTAGCATTACTTTTACAEST: gi|192307706|gb|FK001650.1|FK001650
genomic: CGGAGAACAAGAGAGTTGTTTCAATAGTTTCAACTGTAGATTTTGGAAAGgttggtcatt ... ttttattcagGTGGCATTTGTTGCAATTGGAGCTACAATGGTTGGTAGCATTACTTTTACA
EST: CGGAGAACAAGAGAGTTGTTTCAATAGTTTCAACTGTAGATTTTGGAAAG GTGGCATTTGTTGCAATTGGAGCTACAATGGTTGGTAGCATTACTTTTACAEST: gi|51338331|gb|CO982197.1|CO982197
genomic: CGGAGAACAAGAGAGTTGTTTCAATAGTTTCAACTGTAGATTTTGGAAAGgttggtcatt ... ttttattcagGTGGCATTTGTTGCAATTGGAGCTACAATGGTTGGTAGCATTACTTTTACA
EST: CGGAGAACAAGAGAGTTGTTTCAATAGTTTCAACTGTAGATTTTGGAAAG GTGGCATTTGTTGCAATTGGAGCTACAATGGTTGGTAGCATTACTTTTACAEST: gi|151397882|gb|EV267755.1|EV267755
genomic: CGGAGAACAAGAGAGTTGTTTCAATAGTTTCAACTGTAGATTTTGGAAAGgttggtcatt ... ttttattcagGTGGCATTTGTTGCAATTGGAGCTACAATGGTTGGTAGCATTACTTTTACA
EST: CGGAGAACAAGAGAGTTGTTTCAATAGTTTCAACTGTAGATTTTGGAAAG GTGGCATTTGTTGCAATTGGAGCTACAATGGTTGGTAGCATTACTTTTACAEST: gi|7030330|gb|AW460113.1|AW460113
genomic: CGGAGAACAAGAGAGTTGTTTCAATAGTTTCAACTGTAGATTTTGGAAAGgttggtcatt ... ttttattcagGTGGCATTTGTTGCAATTGGAGCTACAATGGTTGGTAGCATTACTTTTACA
EST: CGGAGAACAAGAGAGTTGTTTCAATAGTTTCAACTGTAGATTTTGGAAAG GTGGCATTTGTTGCAATTGGAGCTACAATGGTTGGTAGCATTACTTTTACAEST: gi|10255364|gb|BE823130.1|BE823130
genomic: CGGAGAACAAGAGAGTTGTTTCAATAGTTTCAACTGTAGATTTTGGAAAGgttggtcatt ... ttttattcagGTGGCATTTGTTGCAATTGGAGCTACAATGGTTGGTAGCATTACTTTTACA
EST: CGGAGAACAAGAGAGTTGTTTCAATAGTTTCAACTGTAGATTTTGGAAAG GTGGCATTTGTTGCAATTGGAGCTACAATGGTTGGTAGCATTACTTTTACA
genomic: CGGAGAACAAGAGAGTTGTTTCAATAGTTTCAACTGTAGATTTTGGAAAGgttggtcatt ... ttttattcagGTGGCATTTGTTGCAATTGGAGCTACAATGGTTGGTAGCATTACTTTTACA
atttttgcttatagttgcagacctttattgaccagtatcttataattttattcagGTGGCATTTGTTGCAATTGGAGCTACAATGGTTGGTAGCATTACTTTTACAAAGAAAAAGGGCGACTATGTTAAGAAGGGAGATGAG
tattgac putative branch site (score: 2)
ttttattc putative PPT
agtatcttataatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtcattgcaattaatttctttgtctgaattgttgagttcatgactatatcctgctgaaatttataccataagtttgtgaattattatctgagttacctataatctactgcctctactttcatttttgcttatagttgcagacctttattgaccagtatcttataattttattcagGTGGCATTTGTTGCAATTGGAGCTACAATGGTTGGTAGCATTACTTTTACAAAGAAAAAGGGCGACTATGTTAAGAAGGGAGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG