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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGCTTCTGCTGAACGTGATGATGTTGCTGTATGTGCTGCAGATTGCCGTCTTACGGCATTTAAATCAGTTGATGATAGTACAAGATTCTGGATCAAGgtattttttttctttcttacaattcaattgaatatggaaggcttctaatctaaaaaaaacagttttttaaaatattttataatcaaattttgaaatctgc...

Basic information

species Glycine max
transcript GLYMA08G19310.3
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19310.2 (Glycine max), 5'ss of exon 14
lower sequence: AT4G25970.1 (Arabidopsis thaliana), 5'ss of exon 15
AATTGCTTCTGCTGAACGTGATGATGTTGCTGTATGTGCTGCAGATTGCCGTCTTACGGCATTTAAATCAGTTGATGATAGTACAAGATTCTGGATCAAGgtat-----tttttttctttcttacaattcaattga------atatggaagg--------cttctaatctaaaaaaaacagttttt----taaaatattttataatcaa--------attttgaaatctgc----------------------
|||||| |     || |  |||||||||||||||| |||||| ||||| ||  | | ||||||| |||| ||||||||||| ||| | |||||||||||||||        | |    |  | ||||| || | |       ||||| || |        ||  |||   ||   |  | | |  |    |  || | | || ||            ||| | |||| | |                      
AATTGCGTGCATGGATCAGGATGATGTTGCTGTATCTGCTGCTGATTGTCGATTAATGGCATTTCAATCGGTTGATGATAGCACACGGTTCTGGATCAAGgtaaagcggcctctagagtattcacaatacactaggcaaggcatatgaaaagttgaataactcttaacacaattgatgctgctgataacctgcaacactgtacaactgttactcgctattctaaaattttcagactgttttcaatattgttag

upper sequence: GLYMA08G19310.2 (Glycine max), 5'ss of exon 14
lower sequence: AT5G57190.1 (Arabidopsis thaliana), 5'ss of exon 15
AATTGCTTCTGCTGAACGTGATGATGTTGCTGTATGTGCTGCAGATTGCCGTCTTACGGCATTTAAATCAGTTGATGATAGTACAAGATTCTGGATCAAGgtattttttttctttcttacaattcaattgaatatggaaggcttctaatctaaaaaaaacagttttttaaa-atattttataatcaa-attttgaaatctgc---------------------------------
||||||||      | ||  ||||||||||||||||||| || ||||| ||  | | ||||||| | || || || |||||||| ||||||||||||||||||   |  || | |     |  | | |  |   |  |    |  || || | |  | | | || |  ||| | ||  | ||    | ||  || ||                                      
AATTGCTTGCATGAACCGCAATGATGTTGCTGTATGTGCCGCTGATTGTCGATTAATGGCATTTCAGTCGGTGGAAGATAGTACCAGATTCTGGATCAAGgtaaaatggtt-tctagagtagcttactatatacttaatcaatattattcaagattagagaattctcaaaacaaatgatgtagctgatataatgcaacacatccttatttttttgcattgattctgcaatgatag

upper sequence: GLYMA08G19310.2 (Glycine max), 5'ss of exon 14
lower sequence: Vv12s0055g00710.t01 (Vitis vinifera), 5'ss of exon 12
AATTGCTTCTGCTGAACGTGATGATGTTGCTGTATGTGCTGCAGATTGCCGTCTTACGGCATTTAAATCAGTTGATGATAGTACAAGATTCTGGATCAAGgtattttttttctttcttacaattcaattgaatatggaaggcttctaatctaaaaaaaacagttttt-taaaatattttataat-caaattttgaaatctgc--
|||||| |     ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| ||||| |||  |  |||||| ||||| |||||||| | | ||  | | |  |||       || |  |  ||| |  ||||   | |    |||||  |   |  ||||  |||    ||   | ||  ||   
AATTGCCTGCATGGAACGTGATGATGTTGCTGTATGTGCTGCAGATAGTCGTCTAACGGCATTTAAATCTGTTGAAGATTCTCTAAGATTTTGGATTAAGgtattatctgtcactttgaatatttgt---gatgta-agagctacacatcttttagaggttgttttggtctcagcttttgcaatgttgataaggtaaaatgaaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58020769|gb|CX707511.1|CX707511
EST:     GTCTTACGGCATTTAAATCAGTTGATGATAGTACAAGATTCTGGATCAAG                         GGTCGAAAGTTTTCAGTTCAAGGTCTTTTGGGGAAAGAAATGTGTTCCAGT
genomic: GTCTTACGGCATTTAAATCAGTTGATGATAGTACAAGATTCTGGATCAAGgtattttttt ... ttacttttagGGTCGAAAGTTTTCAGTTCAAGGTCTTTTGGGGAAAGAAATGTGTTCCAGT
EST: gi|192307706|gb|FK001650.1|FK001650
EST:     GTCTTACGGCATTTAAATCAGTTGATGATAGTACAAGATTCTGGATCAAG                         GGTCGAAAGTTTTCAGTTCAAGGTCTTTTGGGGAAAGAAATGTGTTCCAGT
genomic: GTCTTACGGCATTTAAATCAGTTGATGATAGTACAAGATTCTGGATCAAGgtattttttt ... ttacttttagGGTCGAAAGTTTTCAGTTCAAGGTCTTTTGGGGAAAGAAATGTGTTCCAGT
EST: gi|51338331|gb|CO982197.1|CO982197
EST:     GTCTTACGGCATTTAAATCAGTTGATGATAGTACAAGATTCTGGATCAAG                         GGTCGAAAGTTTTCAGTTCAAGGTCTTTTGGGGAAAGAAATGTGTTCCAGT
genomic: GTCTTACGGCATTTAAATCAGTTGATGATAGTACAAGATTCTGGATCAAGgtattttttt ... ttacttttagGGTCGAAAGTTTTCAGTTCAAGGTCTTTTGGGGAAAGAAATGTGTTCCAGT
EST: gi|15286683|gb|BI470574.1|BI470574
EST:     GAATGGGCACATTTCTCATCTTACGATGTTGGTATTCGATCTGGATCAAGTGCATCCCATATTCTG          
genomic: GAATGGGCACATTTCTCATCTTACGATGTTGGTATTCGATCTGGATCAAGTGCATCCCATATTCTGgtataggata
EST: gi|151397882|gb|EV267755.1|EV267755
EST:     GTCTTACGGCATTTAAATCAGTTGATGATAGTACAAGATTCTGGATCAAG                         GGTCGAAAGTTTTCAGTTCAAGGTCTTTTGGGGAAAGAAATGTGTTCCAGT
genomic: GTCTTACGGCATTTAAATCAGTTGATGATAGTACAAGATTCTGGATCAAGgtattttttt ... ttacttttagGGTCGAAAGTTTTCAGTTCAAGGTCTTTTGGGGAAAGAAATGTGTTCCAGT
EST: gi|9439775|gb|BE440289.1|BE440289
EST:     GTCTTACGGCATTTAAATCAGTTGATGATAGTACAAGATTCTGGATCAAG                         GGTCGAAAGTTTTCAGTTCAAGGTCTTTTGGGGAAAGAAATGTGTTCCAGT
genomic: GTCTTACGGCATTTAAATCAGTTGATGATAGTACAAGATTCTGGATCAAGgtattttttt ... ttacttttagGGTCGAAAGTTTTCAGTTCAAGGTCTTTTGGGGAAAGAAATGTGTTCCAGT
EST: gi|193658135|gb|FK602568.1|FK602568
EST:     GTCTTACGGCATTTAAATCAGTTGATGATAGTACAAGATTCTGGATCAAG                         GGTCGAAAGTTTTCAGTTCAAGGTCTTTTGGGGAAAGAAATGTGTTCCAGT
genomic: GTCTTACGGCATTTAAATCAGTTGATGATAGTACAAGATTCTGGATCAAGgtattttttt ... ttacttttagGGTCGAAAGTTTTCAGTTCAAGGTCTTTTGGGGAAAGAAATGTGTTCCAGT
EST: gi|193424345|gb|FK386414.1|FK386414
EST:     GTCTTACGGCATTTAAATCAGTTGATGATAGTACAAGATTCTGGATCAAG                         GGTCGAAAGTTTTCAGTTCAAGGTCTTTTGGGGAAAGAAATGTGTTCCAGT
genomic: GTCTTACGGCATTTAAATCAGTTGATGATAGTACAAGATTCTGGATCAAGgtattttttt ... ttacttttagGGTCGAAAGTTTTCAGTTCAAGGTCTTTTGGGGAAAGAAATGTGTTCCAGT