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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatggtgctttctttaattgtcattttaattttgtatataatttgatttcaatttttcattttaacatatatttgttgcagGATTATCACCGTTTCCATTTTCCAGTATCAGGAATTATTGAGCAATCTGTAGATATCCCTGGATGCTTGTATACT

Basic information

species Glycine max
transcript GLYMA08G19310.3
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58020769|gb|CX707511.1|CX707511
EST:     CCAGTGCTTTTGTTGATGGACCAATGGTGATTTTCCGTTTGGCACCACAG                         GATTATCACCGTTTCCATTTTCCAGTATCAGGAATTATTGAGCAATCTGTA
genomic: CCAGTGCTTTTGTTGATGGACCAATGGTGATTTTCCGTTTGGCACCACAGgtgaatggtg ... tttgttgcagGATTATCACCGTTTCCATTTTCCAGTATCAGGAATTATTGAGCAATCTGTA
EST: gi|192307706|gb|FK001650.1|FK001650
EST:     CCAGTGCTTTTGTTGATGGACCAATGGTGATTTTCCGTTTGGCACCACAG                         GATTATCACCGTTTCCATTTTCCAGTATCAGGAATTATTGAGCAATCTGTA
genomic: CCAGTGCTTTTGTTGATGGACCAATGGTGATTTTCCGTTTGGCACCACAGgtgaatggtg ... tttgttgcagGATTATCACCGTTTCCATTTTCCAGTATCAGGAATTATTGAGCAATCTGTA
EST: gi|51338331|gb|CO982197.1|CO982197
EST:     CCAGTGCTTTTGTTGATGGACCAATGGTGATTTTCCGTTTGGCACCACAG                         GATTATCACCGTTTCCATTTTCCAGTATCAGGAATTATTGAGCAATCTGTA
genomic: CCAGTGCTTTTGTTGATGGACCAATGGTGATTTTCCGTTTGGCACCACAGgtgaatggtg ... tttgttgcagGATTATCACCGTTTCCATTTTCCAGTATCAGGAATTATTGAGCAATCTGTA
EST: gi|151397882|gb|EV267755.1|EV267755
EST:     CCAGTGCTTTTGTTGATGGACCAATGGTGATTTTCCGTTTGGCACCACAG                         GATTATCACCGTTTCCATTTTCCAGTATCAGGAATTATTGAGCAATCTGTA
genomic: CCAGTGCTTTTGTTGATGGACCAATGGTGATTTTCCGTTTGGCACCACAGgtgaatggtg ... tttgttgcagGATTATCACCGTTTCCATTTTCCAGTATCAGGAATTATTGAGCAATCTGTA
EST: gi|9439775|gb|BE440289.1|BE440289
EST:     CCAGTGCTTTTGTTGATGGACCAATGGTGATTTTCCGTTAGGCACCACAG                         GATTATCACCGTTTCCATTTTCCAGTATCAGGAATTATTGAGCAATCTGTA
genomic: CCAGTGCTTTTGTTGATGGACCAATGGTGATTTTCCGTTTGGCACCACAGgtgaatggtg ... tttgttgcagGATTATCACCGTTTCCATTTTCCAGTATCAGGAATTATTGAGCAATCTGTA
EST: gi|193658135|gb|FK602568.1|FK602568
EST:     CCAGTGCTTTTGTTGATGGACCAATGGTGATTTTCCGTTTGGCACCACAG                         GATTATCACCGTTTCCATTTTCCAGTATCA
genomic: CCAGTGCTTTTGTTGATGGACCAATGGTGATTTTCCGTTTGGCACCACAGgtgaatggtg ... tttgttgcagGATTATCACCGTTTCCATTTTCCAGTATCA
EST: gi|193424345|gb|FK386414.1|FK386414
EST:     CCAGTGCTTTTGTTGATGGACCAATGGTGATTTTCCGTTTGGCACCACAG                         GATTATCACCGTTTCC
genomic: CCAGTGCTTTTGTTGATGGACCAATGGTGATTTTCCGTTTGGCACCACAGgtgaatggtg ... tttgttgcagGATTATCACCGTTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattttgtatataatttgatttcaatttttcattttaacatatatttgttgcagGATTATCACCGTTTCCATTTTCCAGTATCAGGAATTATTGAGCAATCTGTAGATATCCCTGGATGCTTGTATACT
                                 ttttaac  putative branch site (score: 2)
        tatataatttgatttc  TA-rich tract