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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatctccaattctgtggctcaattctggtagctttaatcctgtatttgtacctcctcaccctttcaatttgttatttaatatttatttatttgacattagGTATATGATCGGAAGTCTCAAAGGCTTGTTGAAGAAATAATTGACAAAAAAATTGTATTGTCCATGAGAGCCATTTATCAGTCAAAAATAGGTCTTGGCC

Basic information

species Glycine max
transcript GLYMA08G19310.3
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19310.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv12s0055g00710.t01 (Vitis vinifera), 3'ss of exon 7
----aatctccaattctgtggctcaattctggtagctttaatcctgtatttgtacctcctcaccctttcaatttgttatttaatatttatttatttgacattagGTATATGATCGGAAGTCTCAAAGGCTTGTTGAAGAAATAATTGACAAAAAAATTGTATTGTCCATGAGAGCCATTTATCAGTCAAAAATAGGTCTTGGCC
    |||     ||||  | |       |   |   |||  ||||| |    ||    ||||  |  |   ||| |  | ||||   |||||   || | |||||| | ||| || | | |  | ||||||||||||||| |||||||   |||||||||  | || ||||||||||| || || |||||| |||| |||||||
taagaattgttgattccattgaattgcacgcattttttttttcctgaaaaactaagatctcattcact---tttatcgtctaattaatattttgctg-ctttagGTTTTTGACCGAAGGACAAAGAGGCTTGTTGAAGAATTAATTGATGGAAAAATTGTCCTATCAATGAGAGCCATCTACCAATCAAAATTAGGGCTTGGCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15286683|gb|BI470574.1|BI470574
EST:     CATCTTACGATGTTGGTATTCGATCTGGATCAAGTGCATCCCATATTCTG                         GTATATGATCGGAAGTCTCAAAGGCTTGTTGAAGAAATAATTGACNNNNNN
genomic: CATCTTACGATGTTGGTATTCGATCTGGATCAAGTGCATCCCATATTCTGgtataggata ... ttgacattagGTATATGATCGGAAGTCTCAAAGGCTTGTTGAAGAAATAATTGACAAAAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtacctcctcaccctttcaatttgttatttaatatttatttatttgacattagGTATATGATCGGAAGTCTCAAAGGCTTGTTGAAGAAATAATTGACAAAAAAATTGTATTGTCCATGAGAGCCATTTATCAGTCAAAAATAGGTCTTGGCC
                                        tttattt  CT-rich tract
                tttcaatttgttattt  TA-rich tract