1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
GGTGAAGGAGCTCTTGCAAAGCATTTCTGAAAAGCAAGGAGCACGAATGGATTCACCTGAATCGTCTGCAGATATACCAAAATTTATTGAATCTTTTAAGgtgtaacaatgcttattttatttctttgtgaattacatactttgattttgacatatgtaagtttgtagttctgtagtgtgtcttgattctatgtttcaac...
species | Glycine max |
transcript | GLYMA08G19310.3 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TGCAGATATACCAAAA-TTATTGAAATC-TTTAAGG GATCAAATCAATTGGGCTGAAGTCAAGTATCCACTGGAACACTTTAAGEST: gi|15286683|gb|BI470574.1|BI470574
genomic: TGCAGATATACCAAAATTTATTG-AATCTTTTAA-Ggtgtaacaat ... tgtgttgtagGATCAAATCAATTTGGCTGAAGTCAAGTATCCACTGGAACACTTTAAG
EST: ATTCACCTGAATCGTCTGCAGATATACCAAAATTTATTGAATCTTTTAAG GATCAAATCAATTTGGCTGAAGTCAAGTATCCACTGGAACACTTTAAGEST: gi|151397882|gb|EV267755.1|EV267755
genomic: ATTCACCTGAATCGTCTGCAGATATACCAAAATTTATTGAATCTTTTAAGgtgtaacaat ... tgtgttgtagGATCAAATCAATTTGGCTGAAGTCAAGTATCCACTGGAACACTTTAAG
EST: ATTCACCTGAATCGTCTGCAGATATACCAAAATTTATTGAATCTTTTAAG GATCAAATCAATTTGGCTGAAGTCAAGTATCCACTGGAACACTTTAAG
genomic: ATTCACCTGAATCGTCTGCAGATATACCAAAATTTATTGAATCTTTTAAGgtgtaacaat ... tgtgttgtagGATCAAATCAATTTGGCTGAAGTCAAGTATCCACTGGAACACTTTAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGAAGGAGCTCTTGCAAAGCATTTCTGAAAAGCAAGGAGCACGAATGGATTCACCTGAATCGTCTGCAGATATACCAAAATTTATTGAATCTTTTAAGgtgtaacaatgcttattttatttctttgtgaattacatactttgattttgacatatgtaagtttgtagttctgtagtgtgtcttgattctatgtttcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT