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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGGTCCGCACCTAATTACTGTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacccgaagcttattttacttttaaatatgttttcaggattatcttggttactgcatctgtctcgtgatgtatatatgtggtgcctttgttttt...

Basic information

species Glycine max
transcript GLYMA0048S00290.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0048S00290.2 (Glycine max), 5'ss of exon 9
lower sequence: AT1G50370.1 (Arabidopsis thaliana), 5'ss of exon 9
GTATGGTCCGCACCTAATTACTGTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacccgaagcttattttacttttaaatatgttttcaggattatcttggttactgcatctgtctcgtg-atgtatatatgtggtgcctttgttttt----
|| ||||| || ||||||||||| ||||||||||| ||||| ||||||||  | ||||||||||| || |||||||| ||   |     | ||||  |  | |     | | |   | ||||||| ||  ||    | |  | |  ||| |    | |   |  | |  ||||    
GTGTGGTCTGCGCCTAATTACTGCTACCGTTGTGGGAATGTGGCTTCTATATTGAGTTTCAATGACAACATGgtgaggcatttgttttctcttttgttactga-----tctgccacaatatcttgtttcatgttcttcttacttttatgcactcgtcttcggattctacttttcctt

upper sequence: GLYMA0048S00290.2 (Glycine max), 5'ss of exon 9
lower sequence: AT3G19980.1 (Arabidopsis thaliana), 5'ss of exon 9
GTATGGTCCGCACCTAATTACTGTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacccgaagcttattttacttttaaatat--gttttcaggattatcttggttactgcatctgtctcgtgatgtatatatgtggtgcctttgttttt
|||||||| |||||||||||||||||||| ||||| ||||| ||||||||  | ||||||||||| || |||||||||| | |  ||  | |  ||  |  | |      | |||    | | |  |   |  |  ||| |  | | |   || |   |  |  ||||     |
GTATGGTCTGCACCTAATTACTGTTACCGCTGTGGGAATGTCGCTTCTATATTGAGTTTCAATGACAACATGgtgagcctctcttagtctttcctaaatgaatactctaatcttctctgtcagcaaga--agggattctattacttcagtgattttaatcatttcttttaagat

upper sequence: GLYMA0048S00290.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv10s0071g00950.t01 (Vitis vinifera), 5'ss of exon 9
GTATGGTCCGCACCTAATTACTGTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacccgaa-------gcttattttacttttaaatatgttttcaggattatcttggttactgcatctgtctcgtgatgtatatatgtggtgcctttgttttt
|| ||||| ||||| || ||||||||||||||||| ||||| ||||| ||  | || |||||||| |||||||| |        ||       |||||| | ||||||  ||    | |    || ||     |||||      ||  | | |     || |    ||   |       
GTCTGGTCTGCACCAAACTACTGTTACCGTTGTGGGAATGTGGCTTCCATATTGAGCTTCAATGAGAATATGgtaaaatgttacaaatcatgtgcttatatcacttttggatggtctatggaaatcatgagatttactattatcgtgccctcactaccattttccctgttat-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254340656|gb|GR854384.1|GR854384
EST:     GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATG                         GAAAGAGAAGTTAAATTTTTCACTGAAACAGAGG
genomic: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGG
EST: gi|213611336|gb|DB983956.1|DB983956
EST:     GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATG                         GAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
genomic: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
EST: gi|209728925|gb|BW651715.1|BW651715
EST:     TTAGTTTCAATGAAAATAT-                         ----GAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
genomic: TTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
EST: gi|193346878|gb|FK310146.1|FK310146
EST:     TTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAAATATG                         GAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACA
genomic: TTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAA-TATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACA
EST: gi|207746865|gb|GD721124.1|GD721124
EST:     GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATG                         GAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
genomic: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
EST: gi|31464149|gb|CD406177.1|CD406177
EST:     GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATG                         GAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGTATGAG
genomic: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAG-ATGAG
EST: gi|254340657|gb|GR854385.1|GR854385
EST:     GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATG                         GAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
genomic: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
EST: gi|209728248|gb|BW651683.1|BW651683
EST:     GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATAT-                         ----GAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
genomic: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
EST: gi|213593175|gb|DB975366.1|DB975366
EST:     GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATG                         GAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
genomic: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
EST: gi|16345163|gb|BI970758.1|BI970758
EST:     GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATG                         GAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
genomic: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
EST: gi|207791752|gb|GD763659.1|GD763659
EST:     TTAGTTTCAATGAAAATATG                         GAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
genomic: TTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
EST: gi|31473271|gb|CD415284.1|CD415284
EST:     GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATG                         GAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
genomic: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
EST: gi|254337376|gb|GR849329.1|GR849329
EST:     GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATG                         GAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
genomic: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
EST: gi|5753202|gb|AI960489.1|AI960489
EST:     GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATG                         AAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA
genomic: GTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGgtgagccacc ... cttctaacagGAAAGAGAAGTTAAATTTTTCACTGAAACAGAGGAGAACAACCAGATGAGA