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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGTGACGGTTTGTGGTGATATTCATGGTCAGTTTCATGATCTAATGAAACTTTTCCAGACTGGGGGTCATGTGCCGGAGACAAATTACATTTTTATGgtatctacttctcttttggaactgaacgatgtcgatatgcatttttacaacatctcctttcttgacttctatatcttcctgaatttgtggcag

Basic information

species Glycine max
transcript GLYMA0048S00290.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0048S00290.2 (Glycine max), 5'ss of exon 2
lower sequence: AT3G19980.1 (Arabidopsis thaliana), 5'ss of exon 2
TCCAGTGACGGTTTGTGGTGATATTCATGGTCAGTTTCATGATCTAATGAAACTTTTCCAGACTGGGGGTCATGTGCCGGAGACAAATTACATTTTTATGgtatctacttctcttttggaac----tgaacga--tgtcgatatgcatttttacaacatctcctttcttgacttctatatcttcctgaatttgtggcag
|||||| || || ||||||||||| ||||| |||||||||||||| ||||| ||||| ||||| || |||||||| || || || |||||||||||||||||| | | || |||||||        || | ||  | | |||||| | || |  |     || |    ||   |    |  |  | |            
TCCAGTCACCGTATGTGGTGATATCCATGGCCAGTTTCATGATCTTATGAAGCTTTTTCAGACCGGAGGTCATGTTCCCGACACCAATTACATTTTTATGgtaccgagttttcttttgtggtgtcttgtatgacatattgatatgaaattatgaatacaatcataatctggtgtgggaaattcgcag------------

upper sequence: GLYMA0048S00290.2 (Glycine max), 5'ss of exon 2
lower sequence: AT1G50370.1 (Arabidopsis thaliana), 5'ss of exon 2
TCCAGTGACGGTTTGTGGTGATATTCATGGTCAGTTTCATGATCTAATGAAACTTTTCCAGACTGGGGGTCATGTGCCGGAGACAAATTACATTTTTATGgtatctacttctcttttggaactgaacgatgtcgatatgcatttttacaacatctcctttcttgacttctat---atcttcctgaatttgtggcag
||| || || || ||||||||||| ||||| |||||||||||||| ||||||||||||||||| || |||||||| || ||||| |||||||| ||||||||||  |||     |||||   |   |      || ||     | |  ||||  |  |||  | |  | |     || |||               
TCCTGTCACCGTCTGTGGTGATATCCATGGCCAGTTTCATGATCTTATGAAACTTTTCCAGACCGGAGGTCATGTTCCCGAGACCAATTACATATTTATGgtatagactctgactttgggcgtaggctcgtatgacatatcaatatgtaacacatagtttaattatctgtgggggattttctcag-----------

upper sequence: GLYMA0048S00290.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv10s0071g00950.t01 (Vitis vinifera), 5'ss of exon 2
TCCAGTGACGGTTTGTGGTGATATTCATGGTCAGTTTCATGATCTAATGAAACTTTTCCAGACTGGGGGTCATGTGCCGGAGACAAATTACATTTTTATGgta-----tctacttctcttttggaactga--acgatgtcgatatgcatttt--------tacaacatctcctttc--ttgacttctata------tcttcctgaatttgtggcag
|||||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||| || ||||| ||||||||||||||||||     | |  |||  |||||  | | |  | | || |  | ||  || |        |   |  ||  | |||  || | ||||||       || |||| |||   ||| ||
TCCAGTCACTGTTTGTGGTGATATTCATGGCCAGTTCCATGATCTAATGAAACTTTTCCAGACAGGAGGTCATGTACCAGAGACTAATTACATTTTTATGgtaagatttatgattccgttttgagaattactatggtgcctttttgacttctctggggattcagatttcatcattcatttaatttctatgagcttgtcctccttaatacttggtag

upper sequence: GLYMA0048S00290.2 (Glycine max), 5'ss of exon 2
lower sequence: PP1S31_220V6.1 (Physcomitrella patens), 5'ss of exon 2
TCCAGTGACGGTTTGTGGTGATATTCATGGTCAGTTTCATGATCTAATGAAACTTTTCCAGACTGGGGGTCATGTGCCGGAGACAAATTACATTTTTATGgtatctacttctcttttggaactgaacgatgtcgatatgcattttta-caacatctcctttcttgacttctatatcttcc-tgaatttgtggcag-----
||| || || |||||||| ||||||||||| || ||||||||  ||||||| ||||| |||||||| || ||||||||    |||||||||||||| ||||||   |  |||          |       |  ||| || | ||| |  || || |   |   | | |  |  ||||||  | | ||| | | ||     
TCCTGTTACTGTTTGTGGCGATATTCATGGACAATTTCATGACTTAATGAAGCTTTTTCAGACTGGAGGACATGTGCCTAGTACAAATTACATTTTCATGgtacgcatctctagacgcttcttttttagggctgatgtgaaatttgaataatatattgatgaataaataatgaatcttcaataatttttttgaagtctca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193398959|gb|FK363859.1|FK363859
EST:     AACTTTTCCAGACTGGGGGTCATGTGCCGGAGACAAATTACATTTTTATG                         GGAGACTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTT
genomic: AACTTTTCCAGACTGGGGGTCATGTGCCGGAGACAAATTACATTTTTATGgtatctactt ... tttgtggcagGGAGACTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTT
EST: gi|254340656|gb|GR854384.1|GR854384
EST:     AACTTTTCCAGACTGGGGGTCATGTGCCGGAGACAAATTACATTTTTATG                         GGAGACTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTT
genomic: AACTTTTCCAGACTGGGGGTCATGTGCCGGAGACAAATTACATTTTTATGgtatctactt ... tttgtggcagGGAGACTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTT
EST: gi|193578884|gb|FK536690.1|FK536690
EST:     TCATGTGCCGGAGACAAATTACATTTTTATG                         GGAGACTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTT
genomic: TCATGTGCCGGAGACAAATTACATTTTTATGgtatctactt ... tttgtggcagGGAGACTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTT
EST: gi|208275394|gb|GE079386.1|GE079386
EST:     AACTTTTCCAGACTGGGGGTCATGTGCCGGAGACAAATTACATTTTTATG                         GGGGACTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTT
genomic: AACTTTTCCAGACTGGGGGTCATGTGCCGGAGACAAATTACATTTTTATGgtatctactt ... tttgtggcagGGAGACTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTT