1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTATGATGAATGCCAGAGGAAGTATGGGAATGCTAATGCTTGGCGATATTGTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACTgtaaatctctttttactctctccatcagtcctcctcctatttttcttatgtgcatgtaggcagtggtcaaggtttttttattttattttgaattctgtttgaaaataactaagtcttttatttgctctggttcacttag
species | Glycine max |
transcript | GLYMA0048S00290.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACT GTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAGEST: gi|254340657|gb|GR854385.1|GR854385
genomic: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACTgtaaatctct ... gttcacttagGTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG
EST: GTACAGATG-TTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACT GTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAGEST: gi|193307179|gb|FK271075.1|FK271075
genomic: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACTgtaaatctct ... gttcacttagGTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG
EST: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACT GTGCTTTGTGTTCATGGTGGEST: gi|16345163|gb|BI970758.1|BI970758
genomic: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACTgtaaatctct ... gttcacttagGTGCTTTGTGTTCATGGTGG
EST: GTACAGATGTTTTTGACTATCTTACTCTTNNTGCAATTATAGATGGAACT GTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG
genomic: GTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACTgtaaatctct ... gttcacttagGTGCTTTGTGTTCATGGTGGCCTTTCTCCAGACATTCGATCAATAGATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATGATGAATGCCAGAGGAAGTATGGGAATGCTAATGCTTGGCGATATTGTACAGATGTTTTTGACTATCTTACTCTTTCTGCAATTATAGATGGAACTgtaaatctctttttactctctccatcagtcctcctcctatttttcttatgtgcatgtaggcagtggtcaaggtttttttattttattttgaattctgtttgaaaataactaagtcttttatttgctctggttcacttag
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA