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gtatctacttctcttttggaactgaacgatgtcgatatgcatttttacaacatctcctttcttgacttctatatcttcctgaatttgtggcagGGAGACTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTTTTACTTCTAAAAGCTAG
species | Glycine max |
transcript | GLYMA0048S00290.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACTTTTCCAGACTGGGGGTCATGTGCCGGAGACAAATTACATTTTTATG GGAGACTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTTEST: gi|254340656|gb|GR854384.1|GR854384
genomic: AACTTTTCCAGACTGGGGGTCATGTGCCGGAGACAAATTACATTTTTATGgtatctactt ... tttgtggcagGGAGACTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTT
EST: AACTTTTCCAGACTGGGGGTCATGTGCCGGAGACAAATTACATTTTTATG GGAGACTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTTEST: gi|193578884|gb|FK536690.1|FK536690
genomic: AACTTTTCCAGACTGGGGGTCATGTGCCGGAGACAAATTACATTTTTATGgtatctactt ... tttgtggcagGGAGACTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTT
EST: TCATGTGCCGGAGACAAATTACATTTTTATG GGAGACTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTTEST: gi|208275394|gb|GE079386.1|GE079386
genomic: TCATGTGCCGGAGACAAATTACATTTTTATGgtatctactt ... tttgtggcagGGAGACTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTT
EST: AACTTTTCCAGACTGGGGGTCATGTGCCGGAGACAAATTACATTTTTATG GGGGACTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTT
genomic: AACTTTTCCAGACTGGGGGTCATGTGCCGGAGACAAATTACATTTTTATGgtatctactt ... tttgtggcagGGAGACTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTT
gcatttttacaacatctcctttcttgacttctatatcttcctgaatttgtggcagGGAGACTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTTTTACTTCTAAAAGCTAG
tcttgac putative branch site (score: 3)
ttctatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctacttctcttttggaactgaacgatgtcgatatgcatttttacaacatctcctttcttgacttctatatcttcctgaatttgtggcagGGAGACTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTTTTACTTCTAAAAGCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG