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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACCCAGCTAATATTACCCTTCTACGTGGAAACCATGAAAGTAGACAACTAACGCAGgtatgtttatattatatcacaaacttgtctattgtacctgacatgaattattctaggctagtataaaacagcttatgccaaagaggagattttattgaag...

Basic information

species Glycine max
transcript GLYMA0048S00290.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0048S00290.2 (Glycine max), 5'ss of exon 4
lower sequence: AT3G19980.1 (Arabidopsis thaliana), 5'ss of exon 4
ATACCCAGCTAATATTACCCTTCTACGTGGAAACCATGAAAGTAGACAACTAACGCAGgtatgtttatattatatcacaaacttgtctattgtacctgacatga-attattctaggctagtataaaacagcttatgccaaagaggagattttattgaag-
||| ||||| |||||||| ||| | || ||||| ||||||||||| || ||||||||||||||| | |||| | |  ||    | |||||| | |      | |   | |||   |   |||   ||  | | ||         |   ||  |     | 
ATATCCAGCCAATATTACACTTTTGCGCGGAAATCATGAAAGTAGGCAGCTAACGCAGgtatgtgt-tattctgttccacttatatctattattctgcttttcacgctgttcctaggaggtaagcaat-gttgattatcttctcgttgttacagcagggt

upper sequence: GLYMA0048S00290.2 (Glycine max), 5'ss of exon 4
lower sequence: AT1G50370.1 (Arabidopsis thaliana), 5'ss of exon 4
ATACCCAGCTAATATTACCCTTCTACGTGGAAACCATGAAAGTAGACAACTAACGCAGgtatgtttatattatatcacaaacttgtctattgtacctgacatgaattattctaggctagtataaaacagcttatgccaaagaggagatttt-attgaag---------
| | ||||| ||||| || ||| | |||||||| |||||||||||||| ||||| ||||||||  | |||| ||   ||    | ||||||||  ||||| ||   |  |||         | |  ||| |  ||    ||| |  |||||   | ||          
ACATCCAGCCAATATCACTCTTTTGCGTGGAAATCATGAAAGTAGACAGCTAACTCAGgtatgcat-tattctaatccatttatatctattgttgctgacttgctgtgctct---------tcacgcagttactggttgagaagtaattttcgctcaattgttataac

upper sequence: GLYMA0048S00290.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv10s0071g00950.t01 (Vitis vinifera), 5'ss of exon 4
ATACCCAGCTAATATTACCCTTCTACGTGGAAACCATGAAAGTAGACAACTAACGCAGgtatgtttatattatatcacaaacttgtctattgtacctgacatgaat-tattctaggctagtataaaacagcttat--gccaaagaggagattttattgaag
||| || ||||||||||| ||| | |||||||| ||||| ||||||||||| || |||||||||| |||   ||| || |     | || |  |      || ||  || |||||||   | | |   |  ||||  |         ||||   |||    
ATATCCGGCTAATATTACTCTTTTGCGTGGAAATCATGAGAGTAGACAACTTACTCAGgtatgtt-ataagttataactattaattttaataaagagtgtataaaaatactctaggcatctgttacttatgttatttgtgtttttaaagatgcaattat--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254340656|gb|GR854384.1|GR854384
EST:     CTAATATTACCCTTCTACGTGGAAACCATGAAAGTAGACAACTAACGCAG                         GTCTATGGATTTTATGATGAATGCCAGAGGAAGTATGGGAATGCTAATGCT
genomic: CTAATATTACCCTTCTACGTGGAAACCATGAAAGTAGACAACTAACGCAGgtatgtttat ... gtttttctagGTCTATGGATTTTATGATGAATGCCAGAGGAAGTATGGGAATGCTAATGCT
EST: gi|193578884|gb|FK536690.1|FK536690
EST:     CTAATATTACCCTTCTACGTGGAAACCATGAAAGTAGACAACTAACGCAG                         GTCTATGGATTTTATGA
genomic: CTAATATTACCCTTCTACGTGGAAACCATGAAAGTAGACAACTAACGCAGgtatgtttat ... gtttttctagGTCTATGGATTTTATGA
EST: gi|254340657|gb|GR854385.1|GR854385
EST:     CATGAAAGTAGACAACT-ACGCA-                         GTCTATGGA-TTTATGATGAATGCCAGAGGAAGTATGGGAATGCTAATGC-
genomic: CATGAAAGTAGACAACTAACGCAGgtatgtttat ... gtttttctagGTCTATGGATTTTATGATGAATGCCAGAGGAAGTATGGGAATGCTAATGCT
EST: gi|193307179|gb|FK271075.1|FK271075
EST:     CTAATATTACCCTTCTACGTGGAAACCATGAAAGTAGACAACTAACGCAG                         GTCTATGGATTTTATGATGAATGCCAGAGGAAGTATGGGAATGCTAATGCT
genomic: CTAATATTACCCTTCTACGTGGAAACCATGAAAGTAGACAACTAACGCAGgtatgtttat ... gtttttctagGTCTATGGATTTTATGATGAATGCCAGAGGAAGTATGGGAATGCTAATGCT