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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTTCGTAGAATTGTATGTTGGCATGGGTGCCTCCCGTGTAAGAGATCTATTTGCAAGGGCAAAAAGGGAAGCTCCGTCCATAATCTTTATTGATGAGgtataaaaatatattcttttgttgtgtgaaatcactttgttcaacatatattatttaatattaaactgatcaacatatcttttggtatgcag

Basic information

species Glycine max
transcript GLYMA0028S00210.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0028S00210.2 (Glycine max), 5'ss of exon 5
lower sequence: AT3G47060.1 (Arabidopsis thaliana), 5'ss of exon 5
TGAGTTCGTAGAATTGTATGTTGGCATGGGTGCCTCCCGTGTAAGAGATCTATTTGCAAGGGCAAAAAGGGAAGCTCCGTCCATAATCTTTATTGATGAGgtataaaaatatattcttttgttgtgtgaaatcactttgttcaacatatat-tatttaatattaaactgatcaacatatcttttggtatgcag
|||||| |||||  ||||||| || ||||||||||| |||||||| ||||| |||||| |||| || | ||||||||| || || || ||||||||||||||   || |  || ||  |    |  |     |  | | || ||| | |    || | | |  | | |  || |  |  || |     | |||
TGAGTTTGTAGAGCTGTATGTCGGTATGGGTGCCTCACGTGTAAGGGATCTTTTTGCACGGGCCAAGAAGGAAGCTCCATCGATTATATTTATTGATGAGgttagaataggtagtcgatgtcagattacctccggtatattaaacctctgggcatcttaaacaagattt-tctatttgcctctcatgctccag

upper sequence: GLYMA0028S00210.2 (Glycine max), 5'ss of exon 5
lower sequence: AT5G58870.1 (Arabidopsis thaliana), 5'ss of exon 5
TGAGTTCGTAGAATTGTATGTTGGCATGGGTGCCTCCCGTGTAAGAGATCTATTTGCAAGGGCAAAAAGGGAAGCTCCGTCCATAATCTTTATTGATGAGgtataaaaatatattcttttgttgtgtgaaat--cactttgt-tcaacatatattatttaatattaaactgatcaacatatcttttggtatgcag
|||||| |||||  |||||||||||||||||||||| || ||||| |||||||||||| | || || | ||| |||||||| || || ||||| |||||||| | || | | | ||  | |||   | |  |   ||||||| || |  || ||  ||||     |||   ||     | |||||   | | |||
TGAGTTTGTAGAGCTGTATGTTGGCATGGGTGCCTCACGCGTAAGGGATCTATTTGCACGAGCCAAGAAGGAGGCTCCGTCAATTATATTTATAGATGAGgtgtgaatacaaaatcagt-gttagattacctgctactttgtatcgatgtaaatc-ttta----caaatgtatttgtgtttctttcaat-ttcag

upper sequence: GLYMA0028S00210.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0004g06120.t01 (Vitis vinifera), 5'ss of exon 5
TGAGTTCGTAGAATTGTATGTTGGCATGGGTGCCTCCCGTGTAAGAGATCTATTTGCAAGGGCAAAAAGGGAAGCTCCGTCCATAATCTTTATTGATGAGgtataaaaatatatt-cttttgttgtgtgaaatcactttgttcaacatatattatttaatattaaactgatcaacatatcttt-tggtatgcag
|||||| ||||||||||||||||||||||| || ||||| || |||||||| |||||| ||||||| |  ||||| || || |||||||| ||||||||||| || ||   |     |||||||||||  | |||   |||||| ||| |     ||  |  |    || |   ||| | ||| |  |  ||||
TGAGTTTGTAGAATTGTATGTTGGCATGGGAGCTTCCCGCGTGAGAGATCTCTTTGCACGGGCAAAGAAAGAAGCACCATCAATAATCTTCATTGATGAGgt-tagaaccgtggaatttttgttgtgt--attca---tgttcagcattttgagcttcctggtgcgttgttagtcatgtttttcttcttcgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254321724|gb|GR825041.1|GR825041
EST:     TATTTGCAAGGGCAAAAAGGGAAGCTCCGTCCATAATCTTTATTGATGAG                         ATAGATGCTGTGGCTAAAAGTCGTGATGGAAAATTTCGCATTGTCAGCAAT
genomic: TATTTGCAAGGGCAAAAAGGGAAGCTCCGTCCATAATCTTTATTGATGAGgtataaaaat ... tggtatgcagATAGATGCTGTGGCTAAAAGTCGTGATGGAAAATTTCGCATTGTCAGCAAT