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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTAGTGATATCAGAACACCCTATGAGAAGATGCTGGACAATAAGGTGGAGTTTGGTTCCCCAGATAAGCGGTCTGGCGGATTCTTTAACTCTGCTCTGgtaagcaggttgcagcaatttttgctgtgtgtgtgattttagagatatatgaagtttgagaattaaactagatagaactagcattgttactgtggtgctg...

Basic information

species Glycine max
transcript GLYMA0028S00210.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0028S00210.2 (Glycine max), 5'ss of exon 1
lower sequence: AT3G47060.1 (Arabidopsis thaliana), 5'ss of exon 1
GCCTAGTGATATCAGAACACCCTATGAGAAGATGCTGGACAATAAGGTGGAGTTTGGTTCCCCAGATAAGCGGTCTGGCGGATTCTTTAACTCTGCTCTGgtaag--caggttgcagcaatttttgctgtgtgt--gtgat-----tttagagatatatgaagtttgagaattaaactagatag-aactagcattgttactgtggtgctg-----------------
|||  ||||||||| |||||| |||||||||||||| |  ||||| ||||| ||||| || || || ||||| ||||| || ||||| ||||||||  |||||        ||    | |||| | ||     |   ||||     |||| || | |   | |  ||   |||   ||| | |  |  | |  |  || |    ||                     
GCCGGGTGATATCAAAACACCGTATGAGAAGATGCTTGGGAATAATGTGGAATTTGGATCGCCTGAGAAGCGTTCTGGTGGCTTCTTCAACTCTGCATTGgtatagtttcatttttactatttgtcctactccttgatgatgatgctttatagttttgcaatgaatggtgattgtgctataaaataggttgggtcttttcaaaagtttctatttttgtttgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254321724|gb|GR825041.1|GR825041
EST:     AGTTTGGTTCCCCAGATAAGCGGTCTGGCGGATTCTTTAACTCTGCTCTG                         ATAGCCTTGTTTTATGCTGCTGTGCTTGCAGGGCTTCTCCATCGATTCCCT
genomic: AGTTTGGTTCCCCAGATAAGCGGTCTGGCGGATTCTTTAACTCTGCTCTGgtaagcaggt ... atattcacagATAGCCTTGTTTTATGCTGCTGTGCTTGCAGGGCTTCTCCATCGATTCCCT