1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAAGAGGTGCAAACATTACTGCAGTCTGCACTGGCTATAGCACTTTCCATTATCCGAGCCAATCCTGCTGTTTTGGATGGTCTTGGTGCTGATTTGGAAGgtaattatacgtactgtttttaatgtttggtgatattgcagtgtgttaatgattgccaaataatagcaatgaatacatgcaatatcttttaacattttta...
species | Glycine max |
transcript | GLYMA0028S00210.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTTGGTGCTGATTTGGAAG AAAAGGAGAAAGTTGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTTGEST: gi|254348944|gb|GR860216.1|GR860216
genomic: CTTGGTGCTGATTTGGAAGgtaattatac ... tattcttcagAAAAGGAGAAAGTTGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTTG
EST: TATCCGAGCCAATCCTGCTGTTTTGGATGGTCTTGGTGCTGATTTGGAAG AAAAGGAGAAAGTTGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTTGEST: gi|209712982|gb|BW684276.1|BW684276
genomic: TATCCGAGCCAATCCTGCTGTTTTGGATGGTCTTGGTGCTGATTTGGAAGgtaattatac ... tattcttcagAAAAGGAGAAAGTTGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTTG
EST: ATGGTCTTGGTGCTGATTTGGAAG AAAAGGAGAAAGTTGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTTGEST: gi|254321725|gb|GR825042.1|GR825042
genomic: ATGGTCTTGGTGCTGATTTGGAAGgtaattatac ... tattcttcagAAAAGGAGAAAGTTGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTTG
EST: TATCCGAGCCAATCCTGCTGTTTTGGATGGTCTTGGTGCTGATTTGGAAG AAAAGGAGAAAGTTGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTTG
genomic: TATCCGAGCCAATCCTGCTGTTTTGGATGGTCTTGGTGCTGATTTGGAAGgtaattatac ... tattcttcagAAAAGGAGAAAGTTGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGAGGTGCAAACATTACTGCAGTCTGCACTGGCTATAGCACTTTCCATTATCCGAGCCAATCCTGCTGTTTTGGATGGTCTTGGTGCTGATTTGGAAGgtaattatacgtactgtttttaatgtttggtgatattgcagtgtgttaatgattgccaaataatagcaatgaatacatgcaatatcttttaacattttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG