Sequence
atgc intronic sequence ATGC exonic sequenceGCGAGGAAGTGAGAAGGCTGTAGTTGCACGACATGAGGCTGGTCATGCTGTAGTAGGTACTGCAGTTGCGAAGCTTCTTCCTGGACAGCCACGTGTTGAGgtaaactgttgaagatgctctattactggaaactaaaaaatgtcactgccattacagatatgcagattgaacttgtattacgcatatttgcctattttga...
Basic information
species | Glycine max |
transcript | GLYMA0028S00210.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA0028S00210.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G163193_T03 (Zea mays), 5'ss of exon 9
GCGAGGAAGTGAGAAGGCTGTAGTTGCACGACATGAGGCTGGTCATGCTGTAGTAGGTACTGCAGTTGCGAAGCTTCTTCCTGGACAGCCACGTGTTGAGgtaaactgttgaagatgctctattactggaaactaaaaaatgtcactgccattacagatatgcagattgaacttgtattacgcatatttgcctattttga
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GAAGGGTAATGAAAAGGCTGTCGTTGCACGGCATGAAGTAGGTCATGCACTCGTGGGAACTGCTGTAGCGAACCTTCTTCCTGGACAGCCACGTGTTGAGgt------ttgaacttaagcaattactgatag---aacaatctgagagaagatgtaatttgacttactttttcaatgctgaatttaacag----------
upper sequence: GLYMA0028S00210.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G58870.1 (Arabidopsis thaliana), 5'ss of exon 10
GCGAGGAAGTGAGAAGGCTGTAGTTGCACGACATGAGGCTGGTCATGCTGTAGTAGGTACTGCAGTTGCGAAGCTTCTTCCTGGACAGCCACGTGTTGAGgtaaactgttgaagatgctctattactggaaactaaaaaatgtcactgccattacagatatgcagattgaacttgtattacgcatatttgcctattttga
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AAAAGGTAGTGAGAAAGCTGTGGTTGCAAGGCATGAAGCTGGGCATGCTGTTGTTGGTACAGCTGTTGCAAGTCTTCTTTCTGGACAGTCCCGTGTTGAGgtaaagcagtgagaaccgcatgttgcttgatactcatt--ttttacatgtgttaatgctctgctaatacatattgtatttttag----------------
upper sequence: GLYMA0028S00210.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G47060.1 (Arabidopsis thaliana), 5'ss of exon 10
GCGAGGAAGTGAGAAGGCTGTAGTTGCACGACATGAGGCTGGTCATGCTGTAGTAGGTACTGCAGTTGCGAAGCTTCTTCCTGGACAGCCACGTGTTGAGgtaaactgttgaagatgctctattactggaaactaaaaaatgtcactgccattacagatatgcagattgaacttgtattacgcatatttgcc-tattttga-
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AAAAGGCAATGAGAAGGCAGTGGTCGCAAGGCATGAAGCTGGGCATGCAGTGGTTGGTACCGCTGTTGCAAATCTTCTTACTGGACAGCCACGTGTTGAGgtaaaatgc-aaaaactttgtctacatttacgctcat---tgtttatgttgtttagtacgtgcaaatgattcaagttttgctcatctttgtggtgttgtcag
upper sequence: GLYMA0028S00210.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv06s0004g06120.t01 (Vitis vinifera), 5'ss of exon 10
GCGAGGAAGTGAGAAGGCTGTAGTTGCACGACATGAGGCTGGTCATGCTGTAGTAGGTACTGCAGTTGCGAAGCTTCTTCCTGGACAGCCACGTGTTGAGgtaaactgttgaagatgctctattactggaaactaaaaaatgtcactgccattacagatatgcag--attgaacttgtattacgcatatttgcctattttga--
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GCAGGGAAGTGAGAAGGCTGTTGTTGCACGGCATGAAGCTGGTCATGCAGTAGTGGGAACTGCTGTTGCTAATCTTCTTCCTGGACAGCCACGTGTTGAGgtaagttattagga---ccttatttacaataaatattttcctttactgct-taacaagtttcaaattatttaacctccctggagaatttggaagacacgtgagaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254321725|gb|GR825042.1|GR825042EST: TAGTAGGTACTGCAGTTGCGAAGCTTCTTCCTGGACAGCCACGTGTTGAG GGACATCTTGTTGATCTTGTTCAAAAAGAGGTGCAAACATTACTGCAGTCT
genomic: TAGTAGGTACTGCAGTTGCGAAGCTTCTTCCTGGACAGCCACGTGTTGAGgtaaactgtt ... aaaacaacagGGACATCTTGTTGATCTTGTTCAAAAAGAGGTGCAAACATTACTGCAGTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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GCGAGGAAGTGAGAAGGCTGTAGTTGCACGACATGAGGCTGGTCATGCTGTAGTAGGTACTGCAGTTGCGAAGCTTCTTCCTGGACAGCCACGTGTTGAGgtaaactgttgaagatgctctattactggaaactaaaaaatgtcactgccattacagatatgcagattgaacttgtattacgcatatttgcctattttga
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